Rorug06G0127800

cysteine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000957
Physical Location & Seq
Reverse (-)
17744420 .. 17744923
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0127800.1

Sequence Viewer

Length: 504 bp
ATGGCTTGCACAATTGACTTTTGCTGCCTAGACGAAGGCTTTAGTGGCAAAACCTACAAGCGCAAGCGGAACCCCGAAGCCGCCGCCGACGACGAAGATGCCGCCATGGAAATCGACGCCGCCTACCCACCTCCGGCGAAGCGATTCGCGGTGTCCTCCTCGGACAATCCGGACAAACCAGTCTTCGGCCGGCCGAGCTACGACGTCGTGATCGCCAGGAAGGTCTCCGGGCGGAAGTGGAAGCAGCCGCGGAAGCAGAGGTCGTCGGCGGTTCAGGTGAGCCGGAAGGGGACGACGTTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGACGAAGCTGAAGGGGGAGATTAAGAGGAACAAGGAGGAGAAGAGGAGGAAGAGGGAGGAGAGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAATATTCTCAAGCCTGGGACCAAGCTGCAGATTATTTCCAAAAAAAAGGCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000741 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009570 GO:0009889 GO:0009987 GO:0010197 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0010941 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019222 GO:0019538 GO:0019752 GO:0030154 GO:0030554 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034248 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042407 GO:0043038 GO:0043039 GO:0043043 GO:0043067 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061024 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DALR_2 tRNA-synt_1e tRNA-synt_1g

Protein Analysis

167

Amino Acids

19.26

Weight (kDa)

10.16

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 207
AccII CGCG 2 cut(s) 149, 250
AccIII TCCGGA 1 cut(s) 169
AcoI YGGCCR 2 cut(s) 187, 191
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 2 cut(s) 117, 204
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 133, 185
AjnI CCWGG 2 cut(s) 215, 460
AluBI AGCT 3 cut(s) 198, 358, 472
AluI AGCT 3 cut(s) 198, 358, 472
Alw26I GTCTC 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 187, 191
ApeKI GCWGC 3 cut(s) 24, 244, 472
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 289, 337
AvaII GGWCC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 11, 256, 459
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 217, 462
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 473
BisI GCNGC 8 cut(s) 25, 81, 84, 102, 120, 245, 248, 473
BlsI GCNGC 8 cut(s) 26, 82, 85, 103, 121, 246, 249, 474
Bme1390I CCNGG 3 cut(s) 217, 229, 462
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 2 cut(s) 71, 466
BmrFI CCNGG 3 cut(s) 217, 229, 462
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 229
BsaHI GRCGYC 2 cut(s) 117, 204
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 4 cut(s) 105, 159, 248, 461
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 185
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 179
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 2 cut(s) 217, 462
BseDI CCNNGG 4 cut(s) 105, 159, 248, 461
BseLI CCNNNNNNNGG 2 cut(s) 133, 185
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 5 cut(s) 148, 317, 401, 409, 422
BseX3I CGGCCG 2 cut(s) 187, 191
BseXI GCAGC 3 cut(s) 11, 256, 459
BseYI CCCAGC 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 149, 250
Bsh1285I CGRYCG 2 cut(s) 190, 194
BshFI GGCC 2 cut(s) 189, 193
BsiEI CGRYCG 2 cut(s) 190, 194
BsiSI CCGG 5 cut(s) 134, 170, 190, 228, 283
BslFI GGGAC 2 cut(s) 304, 478
BslI CCNNNNNNNGG 2 cut(s) 133, 185
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 304, 478
BsnI GGCC 2 cut(s) 189, 193
Bso31I GGTCTC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 2 cut(s) 189, 193
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 2 cut(s) 149, 250
BspLI GGNNCC 2 cut(s) 71, 466
BspMAI CTGCAG 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 4 cut(s) 105, 159, 248, 461
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 2 cut(s) 117, 204
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 217, 462
Bst6I CTCTTC 2 cut(s) 386, 395
BstACI GRCGYC 2 cut(s) 117, 204
BstC8I GCNNGC 3 cut(s) 7, 65, 191
BstDSI CCRYGG 2 cut(s) 105, 248
BstFNI CGCG 2 cut(s) 149, 250
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 210
BstMCI CGRYCG 2 cut(s) 190, 194
BstMWI GCNNNNNNNGC 3 cut(s) 45, 195, 253
BstNI CCWGG 2 cut(s) 217, 462
BstSCI CCNGG 3 cut(s) 215, 227, 460
BstSFI CTRYAG 1 cut(s) 473
BstUI CGCG 2 cut(s) 149, 250
BstV1I GCAGC 3 cut(s) 11, 256, 459
BstV2I GAAGAC 1 cut(s) 175
BstZI CGGCCG 2 cut(s) 187, 191
BsuRI GGCC 2 cut(s) 189, 193
BtgI CCRYGG 2 cut(s) 105, 248
Cac8I GCNNGC 3 cut(s) 7, 65, 191
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 465
Cfr42I CCGCGG 1 cut(s) 251
CseI GACGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 106
CviQI GTAC 1 cut(s) 337
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 2 cut(s) 187, 191
EagI CGGCCG 2 cut(s) 187, 191
Eam1104I CTCTTC 2 cut(s) 386, 395
EarI CTCTTC 2 cut(s) 386, 395
EciI GGCGGA 1 cut(s) 247
EclXI CGGCCG 2 cut(s) 187, 191
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 465
Eco52I CGGCCG 2 cut(s) 187, 191
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 215, 460
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 109
FaiI YATR 1 cut(s) 107
FaqI GGGAC 2 cut(s) 304, 478
FatI CATG 1 cut(s) 105
Fnu4HI GCNGC 8 cut(s) 25, 81, 84, 102, 120, 245, 248, 473
FseI GGCCGGCC 1 cut(s) 193
Fsp4HI GCNGC 8 cut(s) 25, 81, 84, 102, 120, 245, 248, 473
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 62
GluI GCNGC 8 cut(s) 25, 81, 84, 102, 120, 245, 248, 473
GsaI CCCAGC 1 cut(s) 501
HaeIII GGCC 2 cut(s) 189, 193
HapII CCGG 5 cut(s) 134, 170, 190, 228, 283
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 2 cut(s) 117, 204
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 144
HpaII CCGG 5 cut(s) 134, 170, 190, 228, 283
HphI GGTGA 2 cut(s) 289, 337
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 170, 208
Hpy99I CGWCG 7 cut(s) 92, 95, 119, 206, 209, 268, 298
HpyAV CCTTC 6 cut(s) 29, 214, 280, 325, 355, 436
HpyCH4IV ACGT 2 cut(s) 204, 296
HpyCH4V TGCA 2 cut(s) 9, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 195, 253
HpySE526I ACGT 2 cut(s) 204, 296
Hsp92I GRCGYC 2 cut(s) 117, 204
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 169
KroI GCCGGC 1 cut(s) 189
KroNI GCCGGC 1 cut(s) 191
KspI CCGCGG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 210
Lsp1109I GCAGC 3 cut(s) 11, 256, 459
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 204, 296
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MfeI CAATTG 1 cut(s) 12
MluCI AATT 1 cut(s) 12
MroI TCCGGA 1 cut(s) 169
MroNI GCCGGC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 5 cut(s) 134, 170, 190, 228, 283
MspR9I CCNGG 3 cut(s) 217, 229, 462
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 217, 462
MvnI CGCG 2 cut(s) 149, 250
MwoI GCNNNNNNNGC 3 cut(s) 45, 195, 253
NaeI GCCGGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 105
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 189
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 2 cut(s) 71, 466
NmeAIII GCCGAG 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 8 cut(s) 26, 82, 85, 103, 121, 246, 249, 474
Psp6I CCWGG 2 cut(s) 215, 460
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 215, 460
PspN4I GGNNCC 2 cut(s) 71, 466
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 477
RigI GGCCGGCC 1 cut(s) 193
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SacII CCGCGG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 8 cut(s) 25, 81, 84, 102, 120, 245, 248, 473
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 3 cut(s) 217, 229, 462
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 473
Sfr303I CCGCGG 1 cut(s) 251
SgrBI CCGCGG 1 cut(s) 251
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 1 cut(s) 12
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 215, 227, 460
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 2 cut(s) 207, 299
TaqI TCGA 2 cut(s) 114, 300
TasI AATT 1 cut(s) 12
TauI GCSGC 5 cut(s) 83, 86, 104, 122, 250
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 3 cut(s) 24, 244, 472
VpaK11BI GGWCC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.