Rmu_sc0003559.1_g000021

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003559.1
OG0000957
Physical Location & Seq
Forward (+)
80154 .. 80775
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003559.1_g000021.1.cds

Sequence Viewer

Length: 327 bp
atggctttgaaagtggatagtgaagctgcatataagtgtctcaaagagagatatgggaccaagcaggaggacataatcctctttggtcaatctgtcggaagtagccgtactgttgattttgctgcccgtttgcctcgactaagagcaattgtgcttcatagtctgttattagaagataatcgagctgatgagcgagtcactgttgattcaaggaagaaaaatcctgctgattttgctttatggaagtctgcaaaggaaggtgaacccttctgggatagtccatgggcactggaagacctggttggcatatcgagtgcagtgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

108

Amino Acids

12.09

Weight (kDa)

5.83

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 2 cut(s) 10, 210
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 2 cut(s) 26, 185
AluI AGCT 2 cut(s) 26, 185
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 26, 122
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 13, 109
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 2 cut(s) 27, 123
BlsI GCNGC 2 cut(s) 28, 124
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 2 cut(s) 13, 109
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 112, 202
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 13, 109
BstV2I GAAGAC 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 281
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 198, 287, 324
Cfr13I GGNCC 1 cut(s) 57
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 282, 324
CviJI RGCY 4 cut(s) 5, 26, 105, 185
CviKI_1 RGCY 4 cut(s) 5, 26, 105, 185
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 285, 327
FaiI YATR 9 cut(s) 31, 33, 54, 74, 159, 241, 283, 308, 325
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 281, 323
Fnu4HI GCNGC 2 cut(s) 27, 123
Fsp4HI GCNGC 2 cut(s) 27, 123
GluI GCNGC 2 cut(s) 27, 123
Hin1II CATG 2 cut(s) 285, 327
HinfI GANTC 2 cut(s) 195, 206
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 251, 277
HpyCH4III ACNGT 2 cut(s) 112, 202
HpyCH4V TGCA 3 cut(s) 29, 251, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 285, 327
LpnPI CCDG 6 cut(s) 50, 237, 256, 275, 284, 311
Lsp1109I GCAGC 2 cut(s) 13, 109
MabI ACCWGGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 3 cut(s) 185, 226, 305
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 61, 89, 144
MslI CAYNNNNRTG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 281
NlaIII CATG 2 cut(s) 285, 327
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 28, 124
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 57
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 34
SatI GCNGC 2 cut(s) 27, 123
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 289
SetI ASST 4 cut(s) 28, 187, 262, 300
SexAI ACCWGGT 1 cut(s) 297
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 112, 202
TaqI TCGA 3 cut(s) 136, 181, 311
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 206
TscAI CASTG 3 cut(s) 205, 294, 324
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 26, 122
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 3 cut(s) 205, 294, 324
VpaK11BI GGWCC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.