Rmu_sc0000157.1_g000024

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000157.1
OG0000957
Physical Location & Seq
Forward (+)
108471 .. 109662
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000157.1_g000024.1.cds

Sequence Viewer

Length: 774 bp
atgccgtcgcaactagagaacaactacgagcccattctcttattaaatctattttctcataaaaaaaccctagcctatttctctaccgcatccctctttctctttctctctgttgtcgatctctctgaagcagatcggatcggaacttcccgtcgctggtcctccgtgctcagtctctccgctcagtcctctctctctctcgctcagcggctcagttgttgtcgcgctctctctctcttatatatcactttgtctcagcggctcagaaccagatcggaaccggcggcttcagcttcttcatcactcagtagctcttgctctctctttctctctgcgcgcgcggctgctctgaagactgaaaccatatctttccgaaccaaaagaaaacccccaaagccttctctctcagcctctctcacatctagccctaaatcgctctttgttgatagtgaagctgcatataagtgtctcaaagagagatatgagaccaagcaggaggacataatcctctatggtcaatctgtcggaagtggccgtactgttgattttgctgcccgtttgcctcgactaagagcaattgtgctgcatagtctgatattagaagataatcgagctggtgagcgagtcactgttgattcaaggaagaaaaatcctgctgattttgctttatggaagaagttatgttacagtcgatctgcaaaggaaggtgaacccttctgggacagtccatgggcactggaagacctggttggcatatcgagtgcagtgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

257

Amino Acids

28.44

Weight (kDa)

9.57

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 182
AccII CGCG 4 cut(s) 225, 337, 339, 341
AciI CCGC 6 cut(s) 87, 180, 208, 259, 284, 341
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 532
AcuI CTGAAG 3 cut(s) 147, 273, 371
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 1 cut(s) 639
AjnI CCWGG 1 cut(s) 744
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AluBI AGCT 4 cut(s) 293, 312, 455, 614
AluI AGCT 4 cut(s) 293, 312, 455, 614
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 4 cut(s) 179, 258, 473, 479
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 4 cut(s) 344, 455, 551, 583
AspLEI GCGC 4 cut(s) 227, 337, 339, 341
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 629, 719
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 4 cut(s) 520, 552, 668, 700
BbsI GAAGAC 2 cut(s) 359, 747
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 331, 442, 538, 570
BceAI ACGGC 1 cut(s) 519
BcgI CGANNNNNNTGC 1 cut(s) 748
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 179, 258, 473, 479
BfaI CTAG 3 cut(s) 14, 71, 423
BisI GCNGC 8 cut(s) 209, 260, 285, 342, 345, 456, 552, 584
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 8 cut(s) 210, 261, 286, 343, 346, 457, 553, 585
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 2 cut(s) 359, 747
Bpu1102I GCTNAGC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 728
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 741
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 8 cut(s) 184, 197, 218, 226, 269, 277, 319, 420
BseNI ACTGG 1 cut(s) 741
BsePI GCGCGC 2 cut(s) 335, 337
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 4 cut(s) 331, 442, 538, 570
Bsh1236I CGCG 4 cut(s) 225, 337, 339, 341
BshFI GGCC 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 4 cut(s) 179, 258, 473, 479
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 1 cut(s) 534
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 33, 171, 736
Bsp143I GATC 5 cut(s) 118, 133, 138, 272, 692
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 728
BspACI CCGC 6 cut(s) 87, 180, 208, 259, 284, 341
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 8 cut(s) 183, 196, 217, 225, 268, 276, 318, 419
BspFNI CGCG 4 cut(s) 225, 337, 339, 341
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 728
BssHII GCGCGC 2 cut(s) 335, 337
BssMI GATC 5 cut(s) 118, 133, 138, 272, 692
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 541, 631, 689, 725
BstC8I GCNNGC 2 cut(s) 337, 339
BstDEI CTNAG 9 cut(s) 170, 183, 204, 212, 255, 263, 305, 406, 569
BstDSI CCRYGG 1 cut(s) 728
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 4 cut(s) 225, 337, 339, 341
BstHHI GCGC 4 cut(s) 227, 337, 339, 341
BstKTI GATC 5 cut(s) 121, 136, 141, 275, 695
BstMAI GTCTC 4 cut(s) 179, 258, 473, 479
BstMBI GATC 5 cut(s) 118, 133, 138, 272, 692
BstMWI GCNNNNNNNGC 3 cut(s) 290, 341, 662
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSLI GKGCMC 1 cut(s) 736
BstUI CGCG 4 cut(s) 225, 337, 339, 341
BstV1I GCAGC 4 cut(s) 331, 442, 538, 570
BstV2I GAAGAC 2 cut(s) 359, 747
BsuRI GGCC 1 cut(s) 534
BtgI CCRYGG 1 cut(s) 728
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 3 cut(s) 627, 734, 771
Cac8I GCNNGC 2 cut(s) 337, 339
CfoI GCGC 4 cut(s) 227, 337, 339, 341
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 744
Csp6I GTAC 1 cut(s) 537
CviAII CATG 2 cut(s) 729, 771
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 9 cut(s) 170, 183, 204, 212, 255, 263, 305, 406, 569
DpnI GATC 5 cut(s) 120, 135, 140, 274, 694
DpnII GATC 5 cut(s) 118, 133, 138, 272, 692
EaeI YGGCCR 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 3 cut(s) 147, 273, 371
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 2 cut(s) 732, 774
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 728, 770
Fnu4HI GCNGC 8 cut(s) 209, 260, 285, 342, 345, 456, 552, 584
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 8 cut(s) 209, 260, 285, 342, 345, 456, 552, 584
FspBI CTAG 3 cut(s) 14, 71, 423
GlaI GCGC 4 cut(s) 226, 336, 338, 340
GluI GCNGC 8 cut(s) 209, 260, 285, 342, 345, 456, 552, 584
HaeIII GGCC 1 cut(s) 534
HapII CCGG 1 cut(s) 281
HhaI GCGC 4 cut(s) 227, 337, 339, 341
Hin1II CATG 2 cut(s) 732, 774
Hin6I GCGC 4 cut(s) 225, 335, 337, 339
HinP1I GCGC 4 cut(s) 225, 335, 337, 339
HinfI GANTC 2 cut(s) 624, 635
HpaII CCGG 1 cut(s) 281
HphI GGTGA 2 cut(s) 629, 719
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 9 cut(s) 127, 138, 143, 266, 277, 351, 374, 527, 594
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 2 cut(s) 10, 156
HpyAV CCTTC 3 cut(s) 408, 698, 724
HpyCH4III ACNGT 4 cut(s) 541, 631, 689, 725
HpyCH4V TGCA 4 cut(s) 458, 586, 698, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 341, 662
HpyF3I CTNAG 9 cut(s) 170, 183, 204, 212, 255, 263, 305, 406, 569
Hsp92II CATG 2 cut(s) 732, 774
HspAI GCGC 4 cut(s) 225, 335, 337, 339
Kzo9I GATC 5 cut(s) 118, 133, 138, 272, 692
Lsp1109I GCAGC 4 cut(s) 331, 442, 538, 570
LweI GCATC 1 cut(s) 98
MabI ACCWGGT 1 cut(s) 744
MaeI CTAG 3 cut(s) 14, 71, 423
MaeIII GTNAC 2 cut(s) 625, 683
MalI GATC 5 cut(s) 120, 135, 140, 274, 694
MauBI CGCGCGCG 1 cut(s) 337
MbiI CCGCTC 1 cut(s) 182
MboI GATC 5 cut(s) 118, 133, 138, 272, 692
MboII GAAGA 6 cut(s) 288, 364, 614, 655, 685, 752
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 3 cut(s) 33, 171, 736
MluCI AATT 1 cut(s) 576
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 7 cut(s) 104, 172, 199, 421, 490, 518, 573
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 463
MspA1I CMGCKG 2 cut(s) 208, 259
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 746
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 4 cut(s) 225, 337, 339, 341
MwoI GCNNNNNNNGC 3 cut(s) 290, 341, 662
NcoI CCATGG 1 cut(s) 728
NdeII GATC 5 cut(s) 118, 133, 138, 272, 692
NlaIII CATG 2 cut(s) 732, 774
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 625
PauI GCGCGC 2 cut(s) 335, 337
PfeI GAWTC 1 cut(s) 635
PkrI GCNGC 8 cut(s) 210, 261, 286, 343, 346, 457, 553, 585
PleI GAGTC 1 cut(s) 632
PpsI GAGTC 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 159
PteI GCGCGC 2 cut(s) 335, 337
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 8 cut(s) 209, 260, 285, 342, 345, 456, 552, 584
Sau3AI GATC 5 cut(s) 118, 133, 138, 272, 692
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 3 cut(s) 33, 171, 736
SetI ASST 6 cut(s) 295, 314, 457, 616, 709, 747
SexAI ACCWGGT 1 cut(s) 744
SfaNI GCATC 1 cut(s) 98
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 463
Sse9I AATT 1 cut(s) 576
SsiI CCGC 6 cut(s) 87, 180, 208, 259, 284, 341
SspMI CTAG 3 cut(s) 14, 71, 423
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 4 cut(s) 541, 631, 689, 725
TaqI TCGA 5 cut(s) 117, 565, 610, 691, 758
TasI AATT 1 cut(s) 576
TauI GCSGC 4 cut(s) 211, 262, 287, 344
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 3 cut(s) 634, 741, 771
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 4 cut(s) 344, 455, 551, 583
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 3 cut(s) 634, 741, 771
VpaK11BI GGWCC 1 cut(s) 159
XspI CTAG 3 cut(s) 14, 71, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.