Rorug06G0272900

cysteine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000957
Physical Location & Seq
Forward (+)
42040465 .. 42043420
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0272900.1

Sequence Viewer

Length: 594 bp
ATGGCTTCCGACGATCCCAAAGCTTCAGACGCAGAATCAGAGGCTCCTCCATCTTCGTCTTGGAAGGACCGCATCGTCGTCCCCACACTCGTCGCCGGAATCGTTGGCGCCGGAGCTGGGTTGGTGTCCAAGCATCGGAAAGTCGTCGGCCTCCCAACCAGCTCCGCCACTTACGCTGCTAATTTCGCCATTGTCACAGCTTGTTACTGCGGGGCGCGTGAGTATGTAGGAATAACTAGAAAAACAGGGCCTGATGATCTGCTCAACTCTGCAATTGCCGGCTTTGGCAGTGGGGCTATTCTTGGGCGGCTTTACGGTGGTCCAGTTGCTGCTGTCCGCTACTCAATACTCTTTACGATTGCTGGGACAACATTGGACTATGCTACAATTAAACTACGACCTGTCTTGAAGAGCTACAAAGAATCTATGCTTGGGAGTAGCGATGATTCAAAGAAGAATGATGGCTGGCTGAAACTGCCTGACTGGTCCCCTATCAAAGTACTTGATGAAGAAGCCCTTGCTGCAAAGCAGGCTCGAGAAAAGCAGTTATATGCACAGAGGGGACTTGGGAACTTCACCAAAGAAGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000741 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009570 GO:0009889 GO:0009987 GO:0010197 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0010941 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019222 GO:0019538 GO:0019752 GO:0030154 GO:0030554 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034248 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042407 GO:0043038 GO:0043039 GO:0043043 GO:0043067 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061024 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DALR_2 tRNA-synt_1e tRNA-synt_1g

Protein Analysis

197

Amino Acids

20.84

Weight (kDa)

8.77

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 50 - 120 1.1e-06 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 217
AciI CCGC 5 cut(s) 70, 165, 210, 307, 337
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 117, 135
AgsI TTSAA 2 cut(s) 409, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 5 cut(s) 23, 116, 162, 200, 414
AluI AGCT 5 cut(s) 23, 116, 162, 200, 414
AlwI GGATC 1 cut(s) 8
AlwNI CAGNNNCTG 2 cut(s) 251, 329
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 2 cut(s) 148, 248
ApeKI GCWGC 3 cut(s) 176, 329, 521
AspLEI GCGC 2 cut(s) 110, 217
AspS9I GGNCC 4 cut(s) 67, 248, 320, 486
AsuHPI GGTGA 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 3 cut(s) 67, 320, 486
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 163, 316, 508
BccI CCATC 2 cut(s) 58, 455
BfaI CTAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 4 cut(s) 177, 308, 330, 522
BlsI GCNGC 4 cut(s) 178, 309, 331, 523
BmcAI AGTACT 1 cut(s) 501
Bme18I GGWCC 3 cut(s) 67, 320, 486
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 4 cut(s) 67, 248, 320, 486
BmiI GGNNCC 3 cut(s) 45, 109, 488
BmsI GCATC 2 cut(s) 81, 142
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 135
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 323, 488
BseLI CCNNNNNNNGG 2 cut(s) 117, 135
BseNI ACTGG 2 cut(s) 323, 488
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 163, 316, 508
BseYI CCCAGC 2 cut(s) 116, 362
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 150, 250
BshNI GGYRCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 3 cut(s) 96, 111, 279
BslFI GGGAC 4 cut(s) 65, 379, 472, 576
BslI CCNNNNNNNGG 2 cut(s) 117, 135
BsmFI GGGAC 4 cut(s) 65, 379, 472, 576
BsnI GGCC 2 cut(s) 150, 250
BsoBI CYCGRG 1 cut(s) 534
Bsp143I GATC 2 cut(s) 13, 256
BspACI CCGC 5 cut(s) 70, 165, 210, 307, 337
BspANI GGCC 2 cut(s) 150, 250
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 45, 109, 488
BspPI GGATC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 323, 488
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 2 cut(s) 13, 256
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 404, 579
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 280, 467, 531
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 217
BstKTI GATC 2 cut(s) 16, 259
BstMBI GATC 2 cut(s) 13, 256
BstMWI GCNNNNNNNGC 6 cut(s) 29, 173, 185, 475, 521, 530
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 163, 316, 508
BsuRI GGCC 2 cut(s) 150, 250
BtgZI GCGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 3 cut(s) 280, 467, 531
CaiI CAGNNNCTG 2 cut(s) 251, 329
CfoI GCGC 2 cut(s) 110, 217
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 4 cut(s) 67, 248, 320, 486
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 500
CviQI GTAC 1 cut(s) 500
DinI GGCGCC 1 cut(s) 109
DpnI GATC 2 cut(s) 15, 258
DpnII GATC 2 cut(s) 13, 256
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 404, 579
EarI CTCTTC 2 cut(s) 404, 579
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 3 cut(s) 67, 320, 486
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 248
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
FaiI YATR 5 cut(s) 225, 381, 428, 550, 552
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 4 cut(s) 65, 379, 472, 576
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 4 cut(s) 177, 308, 330, 522
Fsp4HI GCNGC 4 cut(s) 177, 308, 330, 522
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 109, 216
GluI GCNGC 4 cut(s) 177, 308, 330, 522
GsaI CCCAGC 2 cut(s) 120, 366
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 150, 250
HapII CCGG 3 cut(s) 96, 111, 279
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 110, 217
Hin1I GRCGYC 1 cut(s) 108
Hin6I GCGC 2 cut(s) 108, 215
HinP1I GCGC 2 cut(s) 108, 215
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 5 cut(s) 35, 99, 422, 446, 587
HpaII CCGG 3 cut(s) 96, 111, 279
HphI GGTGA 1 cut(s) 568
Hpy188I TCNGA 4 cut(s) 10, 28, 40, 138
Hpy188III TCNNGA 2 cut(s) 406, 536
Hpy99I CGWCG 4 cut(s) 14, 80, 95, 149
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 272, 524, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 173, 185, 475, 521, 530
Hsp92I GRCGYC 1 cut(s) 108
HspAI GCGC 2 cut(s) 108, 215
KasI GGCGCC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 13, 256
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 3 cut(s) 49, 113, 167
Lsp1109I GCAGC 3 cut(s) 163, 316, 508
LweI GCATC 2 cut(s) 81, 142
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 193, 203
MalI GATC 2 cut(s) 15, 258
MboI GATC 2 cut(s) 13, 256
MboII GAAGA 4 cut(s) 45, 421, 466, 521
MfeI CAATTG 1 cut(s) 273
MluCI AATT 3 cut(s) 181, 273, 387
Mly113I GGCGCC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 34, 57, 161, 552
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 2 cut(s) 390, 592
MspI CCGG 3 cut(s) 96, 111, 279
MunI CAATTG 1 cut(s) 273
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 6 cut(s) 29, 173, 185, 475, 521, 530
NaeI GCCGGC 1 cut(s) 280
NarI GGCGCC 1 cut(s) 108
NdeII GATC 2 cut(s) 13, 256
NgoMIV GCCGGC 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 45, 109, 488
NmuCI GTSAC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 4 cut(s) 35, 99, 422, 446
PkrI GCNGC 4 cut(s) 178, 309, 331, 523
PluTI GGCGCC 1 cut(s) 111
PspFI CCCAGC 2 cut(s) 116, 362
PspN4I GGNNCC 3 cut(s) 45, 109, 488
PspPI GGNCC 4 cut(s) 67, 248, 320, 486
PstNI CAGNNNCTG 2 cut(s) 251, 329
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 390, 592
SatI GCNGC 4 cut(s) 177, 308, 330, 522
Sau3AI GATC 2 cut(s) 13, 256
Sau96I GGNCC 4 cut(s) 67, 248, 320, 486
ScaI AGTACT 1 cut(s) 501
SetI ASST 6 cut(s) 25, 118, 164, 202, 403, 416
SfaNI GCATC 2 cut(s) 81, 142
SfoI GGCGCC 1 cut(s) 109
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 67, 320, 486
SlaI CTCGAG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 3 cut(s) 181, 273, 387
SsiI CCGC 5 cut(s) 70, 165, 210, 307, 337
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 535
TasI AATT 3 cut(s) 181, 273, 387
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 4 cut(s) 35, 99, 422, 446
Tru1I TTAA 2 cut(s) 390, 592
Tru9I TTAA 2 cut(s) 390, 592
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 176, 329, 521
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 522
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 3 cut(s) 67, 320, 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.