Rw6G033450

cysteine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
58027121 .. 58030158
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033450.1

Sequence Viewer

Length: 1365 bp
ATGTTCTCTACAGGCAGATATCTTAGGCATTTGGGCTATCAAGTCACTTATGTTCGAAATTTCACCGACGTTGATGACAAAATAATTGCTAGAGCAAATGAATTGGGAGAGGATCCAATCAGTTTGAGTAGGCGTTACTGTGAGGAGTTCAATCGAGATATGGAGTGTCTTCATTGCCTGCCTCCTTCTGTGGAACCGCGAGTGTCTGATCACATGCCACAGATCATTGATATGATTAAGCAGATTATTGAAAATGGACATGCCTATGGAGTTGATGGGGATGTGTATTTCAGTGTTGACAAGTTCCCAGATTATGGACGTCTATCTGGGCGAAAATTAGAAGATAATCGAGCCGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGGCCCTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTGCTGCTTATTTGGGTTACTCTTTTGACATACATGGTGGAGGGATGGACCTTGTGTTTCCCCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAACAAAGTGATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCCGAGAAAATGTCGAAATCCCTAGGGAACTTCTTTACAATTCGGCAGGTTATAGACCTATACCATCCATTGGCTTTGCGACTTTTCTTATTAGGGACCCATTATCAGTCTCCAATCAACTACTCTGATGTGCAGCTTGAAAGCACTTCAGAGCGGATCTTCTACATATTTCAGACTTTATATGATTGTGAAAGTGTCGTAAGCCCGCATGATGTGCCAACCCTGAAGGATACCATTCCTCCTGAAATAGTGGAAAGCATCAATAAGTTCTACAATGTTTTTGTAACATCAATGTCGGATGATCTTCACAGTTCTGTTGTTTTTGGTGCATTATCAGACCCATTAAAAACTATGAATGATCTGCTACACACTCGCAAGGGCAAGAAGCAAGCATTGAGGATAGAGTCTCTTGCAGCTTTGGAAAAGATTACCAGGAATGTTTTAAGCATTTTGGGATTACTGCCTGCAAGTTACAACGAGATTCTGCAGCAGCTGAGAGAAAAAGCCTTGAAGCGTGCAAAATTAACAGAAGATCAAGTATTGCAGAAAATCGAGGAAAGAACTGCAGCAAGGAAGAACAAAGAGTACGAAAAATCAGATACAATTCGAAAAAATTTAGCTGCTGTGGGAATCACTCTTATGGACAACCCAGATGGGACAACATGGAGACCAGCTGTACCTCTTGCAATTCAGGAGCAGCAGGTGGCATCTCCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

51.57

Weight (kDa)

5.82

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 6 - 265 1.7e-112 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1339
AatII GACGTC 1 cut(s) 322
Acc36I ACCTGC 2 cut(s) 685, 1339
AccB7I CCANNNNNTGG 2 cut(s) 314, 718
AccBSI CCGCTC 1 cut(s) 802
AccII CGCG 1 cut(s) 199
AciI CCGC 3 cut(s) 197, 802, 854
AclWI GGATC 3 cut(s) 107, 120, 812
AcsI RAATTY 2 cut(s) 58, 1261
AcuI CTGAAG 2 cut(s) 780, 893
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 2 cut(s) 1235, 1326
AfiI CCNNNNNNNGG 2 cut(s) 314, 718
AgsI TTSAA 5 cut(s) 151, 251, 378, 788, 1159
AjnI CCWGG 3 cut(s) 457, 466, 1079
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AluBI AGCT 6 cut(s) 615, 784, 1064, 1141, 1268, 1322
AluI AGCT 6 cut(s) 615, 784, 1064, 1141, 1268, 1322
Alw26I GTCTC 3 cut(s) 762, 1059, 1309
AlwI GGATC 3 cut(s) 107, 120, 812
AlwNI CAGNNNCTG 1 cut(s) 1141
AoxI GGCC 1 cut(s) 454
ApaI GGGCCC 1 cut(s) 458
ApeKI GCWGC 9 cut(s) 500, 590, 781, 1061, 1135, 1138, 1214, 1268, 1345
ApoI RAATTY 2 cut(s) 58, 1261
AspA2I CCTAGG 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 454, 455, 544, 744
AsuHPI GGTGA 3 cut(s) 55, 368, 440
AsuII TTCGAA 2 cut(s) 55, 1255
AvaII GGWCC 2 cut(s) 544, 744
AvrII CCTAGG 1 cut(s) 670
BaeGI GKGCMC 1 cut(s) 458
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 2 cut(s) 161, 469
BbvI GCAGC 9 cut(s) 487, 577, 793, 1073, 1147, 1150, 1226, 1255, 1357
BccI CCATC 4 cut(s) 269, 535, 720, 1295
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciT130I CCWGG 3 cut(s) 459, 468, 1081
BciVI GTATCC 2 cut(s) 615, 871
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 762, 1059, 1309
BfaI CTAG 2 cut(s) 90, 671
BfmI CTRYAG 4 cut(s) 9, 642, 1133, 1212
BfuAI ACCTGC 2 cut(s) 685, 1339
BfuI GTATCC 2 cut(s) 615, 871
BisI GCNGC 9 cut(s) 501, 591, 782, 1062, 1136, 1139, 1215, 1269, 1346
BlnI CCTAGG 1 cut(s) 670
BlsI GCNGC 9 cut(s) 502, 592, 783, 1063, 1137, 1140, 1216, 1270, 1347
Bme1390I CCNGG 3 cut(s) 459, 468, 1081
Bme18I GGWCC 2 cut(s) 544, 744
BmgT120I GGNCC 4 cut(s) 454, 455, 544, 744
BmiI GGNNCC 6 cut(s) 114, 195, 455, 456, 745, 746
BmrFI CCNGG 3 cut(s) 459, 468, 1081
BmsI GCATC 1 cut(s) 915
BpiI GAAGAC 2 cut(s) 161, 469
Bpu14I TTCGAA 2 cut(s) 55, 1255
BsaHI GRCGYC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 1309
BsaJI CCNNGG 3 cut(s) 449, 457, 670
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 718
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 3 cut(s) 459, 468, 1081
BseDI CCNNGG 3 cut(s) 449, 457, 670
BseGI GGATG 4 cut(s) 286, 546, 712, 952
BseLI CCNNNNNNNGG 2 cut(s) 314, 718
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 593, 1133
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 9 cut(s) 487, 577, 793, 1073, 1147, 1150, 1226, 1255, 1357
BsgI GTGCAG 2 cut(s) 505, 800
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 456
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 3 cut(s) 455, 757, 1318
BslI CCNNNNNNNGG 2 cut(s) 314, 718
BsmAI GTCTC 3 cut(s) 762, 1059, 1309
BsmFI GGGAC 3 cut(s) 455, 757, 1318
BsnI GGCC 1 cut(s) 456
Bso31I GGTCTC 1 cut(s) 1309
Bsp119I TTCGAA 2 cut(s) 55, 1255
Bsp120I GGGCCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 197, 802, 854
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 592, 1134
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 6 cut(s) 114, 195, 455, 456, 745, 746
BspMAI CTGCAG 2 cut(s) 1137, 1216
BspMI ACCTGC 2 cut(s) 685, 1339
BspPI GGATC 3 cut(s) 107, 120, 812
BspT104I TTCGAA 2 cut(s) 55, 1255
BspTNI GGTCTC 1 cut(s) 1309
BsrBI CCGCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 449, 457, 670
BssMI GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
BssNI GRCGYC 1 cut(s) 319
BssT1I CCWWGG 2 cut(s) 449, 670
Bst2UI CCWGG 3 cut(s) 459, 468, 1081
Bst4CI ACNGT 4 cut(s) 140, 370, 446, 959
BstACI GRCGYC 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 862
BstBI TTCGAA 2 cut(s) 55, 1255
BstC8I GCNNGC 5 cut(s) 179, 854, 1038, 1113, 1164
BstDEI CTNAG 3 cut(s) 23, 579, 1142
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 286, 546, 712, 952
BstFNI CGCG 1 cut(s) 199
BstKTI GATC 7 cut(s) 115, 211, 225, 807, 952, 1009, 1183
BstMAI GTCTC 3 cut(s) 762, 1059, 1309
BstMBI GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
BstMWI GCNNNNNNNGC 3 cut(s) 401, 497, 862
BstNI CCWGG 3 cut(s) 459, 468, 1081
BstNSI RCATGY 3 cut(s) 217, 263, 597
BstSCI CCNGG 3 cut(s) 457, 466, 1079
BstSFI CTRYAG 4 cut(s) 9, 642, 1133, 1212
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 9 cut(s) 487, 577, 793, 1073, 1147, 1150, 1226, 1255, 1357
BstV2I GAAGAC 2 cut(s) 161, 469
BstX2I RGATCY 2 cut(s) 112, 804
BstYI RGATCY 2 cut(s) 112, 804
BsuI GTATCC 2 cut(s) 615, 871
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 4 cut(s) 286, 546, 712, 952
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 298, 366, 493
BveI ACCTGC 2 cut(s) 685, 1339
Cac8I GCNNGC 5 cut(s) 179, 854, 1038, 1113, 1164
CaiI CAGNNNCTG 1 cut(s) 1141
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 4 cut(s) 454, 455, 544, 744
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 2 cut(s) 1234, 1325
CviAII CATG 9 cut(s) 214, 260, 450, 493, 530, 563, 594, 857, 1311
CviQI GTAC 2 cut(s) 1234, 1325
DdeI CTNAG 3 cut(s) 23, 579, 1142
DpnI GATC 7 cut(s) 114, 210, 224, 806, 951, 1008, 1182
DpnII GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
Eco130I CCWWGG 2 cut(s) 449, 670
Eco24I GRGCYC 1 cut(s) 458
Eco31I GGTCTC 1 cut(s) 1309
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 544, 744
Eco57I CTGAAG 2 cut(s) 780, 893
EcoO109I RGGNCCY 3 cut(s) 454, 455, 744
EcoRII CCWGG 3 cut(s) 457, 466, 1079
EcoRV GATATC 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 449, 670
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 2 cut(s) 449, 670
FaeI CATG 9 cut(s) 217, 263, 453, 496, 533, 566, 597, 860, 1314
FaqI GGGAC 3 cut(s) 455, 757, 1318
FatI CATG 9 cut(s) 213, 259, 449, 492, 529, 562, 593, 856, 1310
FauI CCCGC 1 cut(s) 861
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 9 cut(s) 501, 591, 782, 1062, 1136, 1139, 1215, 1269, 1346
FokI GGATG 4 cut(s) 293, 553, 699, 959
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 9 cut(s) 501, 591, 782, 1062, 1136, 1139, 1215, 1269, 1346
FspBI CTAG 2 cut(s) 90, 671
GluI GCNGC 9 cut(s) 501, 591, 782, 1062, 1136, 1139, 1215, 1269, 1346
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 9 cut(s) 217, 263, 453, 496, 533, 566, 597, 860, 1314
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 6 cut(s) 363, 374, 647, 1052, 1129, 1278
HpaII CCGG 1 cut(s) 354
HphI GGTGA 3 cut(s) 55, 368, 440
Hpy166II GTNNAC 3 cut(s) 298, 431, 599
Hpy188I TCNGA 9 cut(s) 208, 582, 652, 775, 799, 822, 946, 985, 1246
Hpy188III TCNNGA 3 cut(s) 155, 890, 1340
Hpy8I GTNNAC 3 cut(s) 298, 431, 599
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 195, 419, 445, 868
HpyCH4III ACNGT 4 cut(s) 140, 370, 446, 959
HpyCH4IV ACGT 2 cut(s) 69, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 497, 862
HpyF3I CTNAG 3 cut(s) 23, 579, 1142
HpySE526I ACGT 2 cut(s) 69, 319
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 9 cut(s) 217, 263, 453, 496, 533, 566, 597, 860, 1314
KflI GGGWCCC 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
LmnI GCTCC 1 cut(s) 1342
Lsp1109I GCAGC 9 cut(s) 487, 577, 793, 1073, 1147, 1150, 1226, 1255, 1357
LweI GCATC 1 cut(s) 915
MabI ACCWGGT 1 cut(s) 466
MaeI CTAG 2 cut(s) 90, 671
MaeII ACGT 2 cut(s) 69, 319
MaeIII GTNAC 7 cut(s) 43, 134, 364, 512, 637, 931, 1118
MalI GATC 7 cut(s) 114, 210, 224, 806, 951, 1008, 1182
MbiI CCGCTC 1 cut(s) 802
MboI GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
MboII GAAGA 8 cut(s) 161, 353, 394, 474, 799, 944, 1190, 1234
MflI RGATCY 2 cut(s) 112, 804
MhlI GDGCHC 1 cut(s) 458
MlyI GAGTC 3 cut(s) 372, 641, 1061
MmeI TCCRAC 1 cut(s) 924
MnlI CCTC 8 cut(s) 103, 136, 192, 530, 897, 1038, 1195, 1338
MseI TTAA 4 cut(s) 237, 992, 1091, 1172
MslI CAYNNNNRTG 4 cut(s) 230, 264, 567, 1286
MspA1I CMGCKG 2 cut(s) 1141, 1322
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 3 cut(s) 459, 468, 1081
MvaI CCWGG 3 cut(s) 459, 468, 1081
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 401, 497, 862
NcoI CCATGG 1 cut(s) 449
NdeII GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
NlaIII CATG 9 cut(s) 217, 263, 453, 496, 533, 566, 597, 860, 1314
NlaIV GGNNCC 6 cut(s) 114, 195, 455, 456, 745, 746
NmuCI GTSAC 3 cut(s) 43, 364, 637
NspI RCATGY 3 cut(s) 217, 263, 597
NspV TTCGAA 2 cut(s) 55, 1255
PaqCI CACCTGC 1 cut(s) 1339
PfeI GAWTC 3 cut(s) 374, 1129, 1278
PflMI CCANNNNNTGG 2 cut(s) 314, 718
PkrI GCNGC 9 cut(s) 502, 592, 783, 1063, 1137, 1140, 1216, 1270, 1347
PleI GAGTC 3 cut(s) 371, 641, 1060
PpsI GAGTC 3 cut(s) 371, 641, 1060
PpuMI RGGWCCY 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 744
Psp6I CCWGG 3 cut(s) 457, 466, 1079
PspGI CCWGG 3 cut(s) 457, 466, 1079
PspN4I GGNNCC 6 cut(s) 114, 195, 455, 456, 745, 746
PspOMI GGGCCC 1 cut(s) 454
PspPI GGNCC 4 cut(s) 454, 455, 544, 744
PspPPI RGGWCCY 1 cut(s) 744
PsrI GAACNNNNNNTAC 2 cut(s) 1217, 1249
PstI CTGCAG 2 cut(s) 1137, 1216
PstNI CAGNNNCTG 1 cut(s) 1141
PsuI RGATCY 2 cut(s) 112, 804
PvuII CAGCTG 2 cut(s) 1141, 1322
RsaI GTAC 2 cut(s) 1235, 1326
RsaNI GTAC 2 cut(s) 1234, 1325
RseI CAYNNNNRTG 4 cut(s) 230, 264, 567, 1286
SaqAI TTAA 4 cut(s) 237, 992, 1091, 1172
SatI GCNGC 9 cut(s) 501, 591, 782, 1062, 1136, 1139, 1215, 1269, 1346
Sau3AI GATC 7 cut(s) 112, 208, 222, 804, 949, 1006, 1180
Sau96I GGNCC 4 cut(s) 454, 455, 544, 744
SchI GAGTC 3 cut(s) 372, 641, 1061
ScrFI CCNGG 3 cut(s) 459, 468, 1081
SduI GDGCHC 1 cut(s) 458
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 1 cut(s) 915
SfcI CTRYAG 4 cut(s) 9, 642, 1133, 1212
SfuI TTCGAA 2 cut(s) 55, 1255
SinI GGWCC 2 cut(s) 544, 744
SmiMI CAYNNNNRTG 4 cut(s) 230, 264, 567, 1286
SsiI CCGC 3 cut(s) 197, 802, 854
SspMI CTAG 2 cut(s) 90, 671
StyD4I CCNGG 3 cut(s) 457, 466, 1079
StyI CCWWGG 2 cut(s) 449, 670
TaaI ACNGT 4 cut(s) 140, 370, 446, 959
TaiI ACGT 2 cut(s) 72, 322
TaqI TCGA 7 cut(s) 55, 154, 349, 480, 662, 1200, 1255
TfiI GAWTC 3 cut(s) 374, 1129, 1278
Tru1I TTAA 4 cut(s) 237, 992, 1091, 1172
Tru9I TTAA 4 cut(s) 237, 992, 1091, 1172
TscAI CASTG 3 cut(s) 298, 373, 493
TseFI GTSAC 3 cut(s) 43, 364, 637
TseI GCWGC 9 cut(s) 500, 590, 781, 1061, 1135, 1138, 1214, 1268, 1345
Tsp45I GTSAC 3 cut(s) 43, 364, 637
TspDTI ATGAA 4 cut(s) 114, 161, 585, 1016
TspRI CASTG 3 cut(s) 298, 373, 493
Van91I CCANNNNNTGG 2 cut(s) 314, 718
VpaK11BI GGWCC 2 cut(s) 544, 744
XapI RAATTY 2 cut(s) 58, 1261
XceI RCATGY 3 cut(s) 217, 263, 597
XmaJI CCTAGG 1 cut(s) 670
XspI CTAG 2 cut(s) 90, 671
ZraI GACGTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.