Rh5CG589600

cysteine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000957
Physical Location & Seq
Reverse (-)
83476768 .. 83478482
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG589600.1

Sequence Viewer

Length: 354 bp
ATGGTCAATCTGTCGGAAGAAGCCGTACTGTTGATTTTGCTGCCTGTTTGCCTCCGACTAAGAGCAATTGTGCTGCATAGTCTGTTATTAGAAGATAATCGAGCTGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGCACTGGAAGACCTGGTTGGCATATCGAGTAAAGTGACTCGGTCACCAGCTCGATTATCCTCTATGTATTCTGTGAAGTGCAGTTGTTGGTTTGATATCCACATGAACATTGATAAATTCCCTCTGGTGAAATATCATGTGCTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000741 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009570 GO:0009889 GO:0009987 GO:0010197 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0010941 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019222 GO:0019538 GO:0019752 GO:0030154 GO:0030554 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034248 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042407 GO:0043038 GO:0043039 GO:0043043 GO:0043067 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061024 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DALR_2 tRNA-synt_1e tRNA-synt_1g

Protein Analysis

117

Amino Acids

13.33

Weight (kDa)

7.74

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 30 - 69 1.2e-09 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 104, 254
AluI AGCT 2 cut(s) 104, 254
ApeKI GCWGC 2 cut(s) 40, 73
ApoI RAATTY 1 cut(s) 320
AsuHPI GGTGA 4 cut(s) 119, 191, 240, 343
BaeGI GKGCMC 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 27, 60
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 218
BisI GCNGC 2 cut(s) 41, 74
BlsI GCNGC 2 cut(s) 42, 75
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 27, 60
BsgI GTGCAG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 200
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 30, 121, 197
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 27, 60
BstV2I GAAGAC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 117, 206
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 26
CviAII CATG 3 cut(s) 201, 307, 341
CviJI RGCY 3 cut(s) 23, 104, 254
CviKI_1 RGCY 3 cut(s) 23, 104, 254
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 200
Eco32I GATATC 1 cut(s) 301
Eco91I GGTNACC 1 cut(s) 246
EcoO65I GGTNACC 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 204, 310, 344
FaiI YATR 8 cut(s) 78, 160, 202, 227, 269, 308, 342, 352
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 200, 306, 340
Fnu4HI GCNGC 2 cut(s) 41, 74
Fsp4HI GCNGC 2 cut(s) 41, 74
GluI GCNGC 2 cut(s) 41, 74
Hin1II CATG 3 cut(s) 204, 310, 344
HinfI GANTC 3 cut(s) 114, 125, 241
HphI GGTGA 4 cut(s) 119, 191, 240, 343
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 16, 56
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 170, 196
HpyCH4III ACNGT 3 cut(s) 30, 121, 197
HpyCH4V TGCA 3 cut(s) 76, 170, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 3 cut(s) 204, 310, 344
Lsp1109I GCAGC 2 cut(s) 27, 60
MabI ACCWGGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 115, 238, 246
MboII GAAGA 4 cut(s) 29, 104, 145, 224
MfeI CAATTG 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 66, 320
MlyI GAGTC 2 cut(s) 123, 235
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 62, 274, 336
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 200
NlaIII CATG 3 cut(s) 204, 310, 344
NmuCI GTSAC 3 cut(s) 115, 238, 246
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 42, 75
PleI GAGTC 2 cut(s) 122, 235
PpsI GAGTC 2 cut(s) 122, 235
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 246
PspGI CCWGG 1 cut(s) 216
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SatI GCNGC 2 cut(s) 41, 74
SchI GAGTC 2 cut(s) 123, 235
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 106, 181, 219, 256
SexAI ACCWGGT 1 cut(s) 216
Sse9I AATT 2 cut(s) 66, 320
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 30, 121, 197
TaqI TCGA 3 cut(s) 100, 230, 256
TaqII GACCGA 1 cut(s) 234
TasI AATT 2 cut(s) 66, 320
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 2 cut(s) 124, 213
TseFI GTSAC 3 cut(s) 115, 238, 246
TseI GCWGC 2 cut(s) 40, 73
Tsp45I GTSAC 3 cut(s) 115, 238, 246
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 2 cut(s) 124, 213
Tth111I GACNNNGTC 1 cut(s) 244
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.