RLG00000011588

cysteine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
10732168 .. 10735535
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011588

Sequence Viewer

Length: 1680 bp
ATGGGGACTCTGCTCAGGTCCTGCAGACCCTTCTTCTCAACTCGGACGCTTCAACTCGGAACGCACCGTTTCAACAACCCCAAAAGGAGAATCCGTTGCCTGAGTACTACTTCTTCTTCAAGCCACTCCCAGCCGTCGATTGATGTCGCCACCAAATCGGAGAGTCCAGCGTCGTCGGAGCTCTGGCTGCACAACACAATGAGCAGGAAGAAGGAGCTCTTTAAGCCCAAAATTGAAGGCAAAGTGGGCATGTATGTCTGTGGAGTCACAGCTTACGATCTTAGCCATATCGGCCATGCTCGCGTCTACGTCACTTTCGATGTTCTCTACAGATATCTTAGGCATTTGGGCTATCAAGTCACTTATGTTCGAAATTTCACCGATGTTGATGACAAAATAATTGCTAGAGCAAATGAATTGGGAGAGGATCCAATCAGTTTGAGTAGGCGTTACTGTGAGGAGTTCAATCGAGATATGGAGTATCTTCATTGCCTGCCTCCATCTGTGGAACCGCGAGTGTCTGATCACATGCCACAGATCATTGATATGATTAAGCAGATTATTGAAAATGGACATGCATATGGAGTTGATGGGGATGTGTATTTCAGTGTTGACAAGTTCCCAGATTATGGACGTCTATCTGGGCGAAAATTAGAAGATAATCGAGCTGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGGCCCTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTGCTGCTTATCTGGGTTACTCTTTTGACATACATGGTGGAGGGATGGACCTTGTGTTTCCTCACCATGAGAACGAAATTGCTCAGAGTTGTGCTGCATGTAAACAAAGTGACATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCCGAGAAAATGTCGAAATCCCTAGGGAACTTCTTTACAATTCGGCAGGTTATAGACCTATACCATCCATTGGCTTTGCGACTTTTCTTATTAGGGACCCATTATCAGTCTCCAATCAACTACTCTGATGTGCAGCTTGAAAGCACTTCAGAGCGGATCTTCTACATATTTCAGACTTTATATGATTGTGAAAGTGTTGTCAACCAGCATGATATGCCAACCCTGAAGGATACCATTCCTCCTGAAATAGTGGAAAGCATCAATAAGTTCTACAATGTTTTTGTAACATCAATGTCGGATGATCTTCACAGTTCTGTTGTTTTTGGTGCATTATCAGACCCATTAAAAACTATGAATGATCTGCTACACACTCGCAAGGGCAAGAAGCAAGCATTGAGGATAGAGTCTCTTGCAGCTTTAGAAAAGATTACCAGAAATGTTTTAAGCATTTTGGGATTACTGCCTGCAAGTTACGCCGAGATTCTGCAGCAGTTGAGAGAAAAAGCCTTGAAGCGTGCAAAATTAACAGAAGATCAAGTATTGCAGAAAATCGAGGAAAGAACTGCAGCAAGGAAGAACAAAGAGTACGAAAAATCAGATACAATTCGAAAAAATTTAGCTGCTGCGGGAATCACTCTTATGGACAACCCAGATGGGACAACATGGAGACCAGCTGTACCTCTTGCAATTCAAGAGCAGCAGGTGGCATCTCCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

63.56

Weight (kDa)

7.03

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 74 - 370 7.8e-131 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g PF09334 95 - 162 3.7e-06 tRNA synthetases class I (M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1654
AatII GACGTC 1 cut(s) 637
Acc36I ACCTGC 2 cut(s) 1000, 1654
AccB7I CCANNNNNTGG 2 cut(s) 629, 1033
AccBSI CCGCTC 1 cut(s) 1117
AccI GTMKAC 1 cut(s) 306
AccII CGCG 2 cut(s) 303, 514
AciI CCGC 3 cut(s) 512, 1117, 1589
AclWI GGATC 3 cut(s) 422, 435, 1127
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 2 cut(s) 373, 1576
AcuI CTGAAG 2 cut(s) 1095, 1208
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 3 cut(s) 106, 1550, 1641
AfiI CCNNNNNNNGG 2 cut(s) 629, 1033
AjnI CCWGG 2 cut(s) 772, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 769, 801
AluBI AGCT 9 cut(s) 181, 217, 272, 668, 930, 1099, 1379, 1583, 1637
AluI AGCT 9 cut(s) 181, 217, 272, 668, 930, 1099, 1379, 1583, 1637
Alw21I GWGCWC 2 cut(s) 183, 219
Alw26I GTCTC 3 cut(s) 1077, 1374, 1624
AlwI GGATC 3 cut(s) 422, 435, 1127
AlwNI CAGNNNCTG 1 cut(s) 21
AoxI GGCC 2 cut(s) 292, 769
ApaI GGGCCC 1 cut(s) 773
ApoI RAATTY 2 cut(s) 373, 1576
AspA2I CCTAGG 1 cut(s) 985
AspS9I GGNCC 5 cut(s) 18, 769, 770, 859, 1059
AsuHPI GGTGA 4 cut(s) 370, 683, 755, 866
AsuII TTCGAA 2 cut(s) 370, 1570
AvaII GGWCC 3 cut(s) 18, 859, 1059
AvrII CCTAGG 1 cut(s) 985
BaeGI GKGCMC 1 cut(s) 773
BamHI GGATCC 1 cut(s) 427
BanII GRGCYC 3 cut(s) 183, 219, 773
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 2 cut(s) 183, 219
BccI CCATC 5 cut(s) 508, 584, 850, 1035, 1610
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 2 cut(s) 774, 783
BciVI GTATCC 2 cut(s) 930, 1186
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 3 cut(s) 1077, 1374, 1624
BfaI CTAG 2 cut(s) 405, 986
BfmI CTRYAG 5 cut(s) 22, 328, 957, 1448, 1527
BfuAI ACCTGC 2 cut(s) 1000, 1654
BfuI GTATCC 2 cut(s) 930, 1186
BglI GCCNNNNNGGC 1 cut(s) 291
BlnI CCTAGG 1 cut(s) 985
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 774, 783
Bme18I GGWCC 3 cut(s) 18, 859, 1059
BmgT120I GGNCC 5 cut(s) 18, 769, 770, 859, 1059
BmiI GGNNCC 6 cut(s) 429, 510, 770, 771, 1060, 1061
BmrFI CCNGG 2 cut(s) 774, 783
BmsI GCATC 1 cut(s) 1230
BpiI GAAGAC 1 cut(s) 784
Bpu10I CCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 2 cut(s) 370, 1570
BsaHI GRCGYC 1 cut(s) 634
BsaI GGTCTC 1 cut(s) 1624
BsaJI CCNNGG 3 cut(s) 764, 772, 985
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 1186, 1216
Bsc4I CCNNNNNNNGG 2 cut(s) 629, 1033
Bse1I ACTGG 1 cut(s) 938
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 2 cut(s) 774, 783
BseDI CCNNGG 3 cut(s) 764, 772, 985
BseGI GGATG 4 cut(s) 601, 861, 1027, 1267
BseLI CCNNNNNNNGG 2 cut(s) 629, 1033
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 3 cut(s) 28, 92, 908
BseNI ACTGG 1 cut(s) 938
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 773
BseYI CCCAGC 1 cut(s) 129
BsgI GTGCAG 3 cut(s) 173, 820, 1115
Bsh1236I CGCG 2 cut(s) 303, 514
BshFI GGCC 2 cut(s) 294, 771
BsiHKAI GWGCWC 2 cut(s) 183, 219
BslFI GGGAC 4 cut(s) 19, 770, 1072, 1633
BslI CCNNNNNNNGG 2 cut(s) 629, 1033
BsmAI GTCTC 3 cut(s) 1077, 1374, 1624
BsmFI GGGAC 4 cut(s) 19, 770, 1072, 1633
BsnI GGCC 2 cut(s) 294, 771
Bso31I GGTCTC 1 cut(s) 1624
Bsp119I TTCGAA 2 cut(s) 370, 1570
Bsp120I GGGCCC 1 cut(s) 769
Bsp1286I GDGCHC 3 cut(s) 183, 219, 773
Bsp143I GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
Bsp19I CCATGG 1 cut(s) 764
BspACI CCGC 3 cut(s) 512, 1117, 1589
BspANI GGCC 2 cut(s) 294, 771
BspCNI CTCAG 3 cut(s) 27, 93, 907
BspFNI CGCG 2 cut(s) 303, 514
BspLI GGNNCC 6 cut(s) 429, 510, 770, 771, 1060, 1061
BspMAI CTGCAG 3 cut(s) 26, 1452, 1531
BspMI ACCTGC 2 cut(s) 1000, 1654
BspPI GGATC 3 cut(s) 422, 435, 1127
BspT104I TTCGAA 2 cut(s) 370, 1570
BspTNI GGTCTC 1 cut(s) 1624
BsrBI CCGCTC 1 cut(s) 1117
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 1 cut(s) 938
BssECI CCNNGG 3 cut(s) 764, 772, 985
BssMI GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 2 cut(s) 764, 985
Bst2UI CCWGG 2 cut(s) 774, 783
Bst4CI ACNGT 5 cut(s) 68, 455, 685, 761, 1274
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstBI TTCGAA 2 cut(s) 370, 1570
BstC8I GCNNGC 5 cut(s) 301, 494, 1353, 1428, 1479
BstDEI CTNAG 5 cut(s) 14, 101, 281, 338, 894
BstDSI CCRYGG 1 cut(s) 764
BstF5I GGATG 4 cut(s) 601, 861, 1027, 1267
BstFNI CGCG 2 cut(s) 303, 514
BstKTI GATC 8 cut(s) 280, 430, 526, 540, 1122, 1267, 1324, 1498
BstMAI GTCTC 3 cut(s) 1077, 1374, 1624
BstMBI GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
BstMWI GCNNNNNNNGC 9 cut(s) 187, 223, 246, 291, 300, 716, 812, 1177, 1436
BstNI CCWGG 2 cut(s) 774, 783
BstNSI RCATGY 4 cut(s) 253, 532, 578, 912
BstSCI CCNGG 2 cut(s) 772, 781
BstSFI CTRYAG 5 cut(s) 22, 328, 957, 1448, 1527
BstSLI GKGCMC 1 cut(s) 773
BstUI CGCG 2 cut(s) 303, 514
BstV2I GAAGAC 1 cut(s) 784
BstX2I RGATCY 2 cut(s) 427, 1119
BstYI RGATCY 2 cut(s) 427, 1119
BsuI GTATCC 2 cut(s) 930, 1186
BsuRI GGCC 2 cut(s) 294, 771
BtgI CCRYGG 1 cut(s) 764
BtsCI GGATG 4 cut(s) 601, 861, 1027, 1267
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 3 cut(s) 613, 681, 808
BveI ACCTGC 2 cut(s) 1000, 1654
Cac8I GCNNGC 5 cut(s) 301, 494, 1353, 1428, 1479
CaiI CAGNNNCTG 1 cut(s) 21
Cfr13I GGNCC 5 cut(s) 18, 769, 770, 859, 1059
CseI GACGC 3 cut(s) 55, 159, 292
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 3 cut(s) 105, 1549, 1640
CviQI GTAC 3 cut(s) 105, 1549, 1640
DdeI CTNAG 5 cut(s) 14, 101, 281, 338, 894
DpnI GATC 8 cut(s) 279, 429, 525, 539, 1121, 1266, 1323, 1497
DpnII GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
EaeI YGGCCR 1 cut(s) 292
Ecl136II GAGCTC 2 cut(s) 181, 217
Eco130I CCWWGG 2 cut(s) 764, 985
Eco24I GRGCYC 3 cut(s) 183, 219, 773
Eco31I GGTCTC 1 cut(s) 1624
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 3 cut(s) 18, 859, 1059
Eco53kI GAGCTC 2 cut(s) 181, 217
Eco57I CTGAAG 2 cut(s) 1095, 1208
EcoICRI GAGCTC 2 cut(s) 181, 217
EcoO109I RGGNCCY 4 cut(s) 18, 769, 770, 1059
EcoRII CCWGG 2 cut(s) 772, 781
EcoRV GATATC 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 764, 985
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 3 cut(s) 183, 219, 773
ErhI CCWWGG 2 cut(s) 764, 985
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 4 cut(s) 19, 770, 1072, 1633
FauI CCCGC 1 cut(s) 1582
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 306
FokI GGATG 4 cut(s) 608, 868, 1014, 1274
FriOI GRGCYC 3 cut(s) 183, 219, 773
FspBI CTAG 2 cut(s) 405, 986
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 294, 771
HgaI GACGC 3 cut(s) 55, 159, 292
Hin1I GRCGYC 1 cut(s) 634
HincII GTYRAC 2 cut(s) 613, 1165
HindII GTYRAC 2 cut(s) 613, 1165
HphI GGTGA 4 cut(s) 370, 683, 755, 866
Hpy166II GTNNAC 5 cut(s) 307, 613, 746, 914, 1165
Hpy188III TCNNGA 3 cut(s) 470, 1205, 1655
Hpy8I GTNNAC 5 cut(s) 307, 613, 746, 914, 1165
Hpy99I CGWCG 3 cut(s) 139, 175, 178
HpyAV CCTTC 6 cut(s) 40, 205, 230, 734, 760, 1183
HpyCH4III ACNGT 5 cut(s) 68, 455, 685, 761, 1274
HpyCH4IV ACGT 2 cut(s) 309, 634
HpyF10VI GCNNNNNNNGC 9 cut(s) 187, 223, 246, 291, 300, 716, 812, 1177, 1436
HpyF3I CTNAG 5 cut(s) 14, 101, 281, 338, 894
HpySE526I ACGT 2 cut(s) 309, 634
Hsp92I GRCGYC 1 cut(s) 634
KflI GGGWCCC 1 cut(s) 1059
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
LmnI GCTCC 2 cut(s) 178, 214
LweI GCATC 1 cut(s) 1230
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 2 cut(s) 405, 986
MaeII ACGT 2 cut(s) 309, 634
MalI GATC 8 cut(s) 279, 429, 525, 539, 1121, 1266, 1323, 1497
MbiI CCGCTC 1 cut(s) 1117
MboI GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
MflI RGATCY 2 cut(s) 427, 1119
MhlI GDGCHC 3 cut(s) 183, 219, 773
MlyI GAGTC 5 cut(s) 172, 273, 687, 956, 1376
MmeI TCCRAC 2 cut(s) 156, 1239
MnlI CCTC 9 cut(s) 418, 451, 507, 845, 882, 1212, 1353, 1510, 1653
Mph1103I ATGCAT 1 cut(s) 580
MseI TTAA 5 cut(s) 222, 552, 1307, 1406, 1487
MslI CAYNNNNRTG 3 cut(s) 545, 579, 1601
MspA1I CMGCKG 1 cut(s) 1637
MspR9I CCNGG 2 cut(s) 774, 783
MvaI CCWGG 2 cut(s) 774, 783
MvnI CGCG 2 cut(s) 303, 514
MwoI GCNNNNNNNGC 9 cut(s) 187, 223, 246, 291, 300, 716, 812, 1177, 1436
NcoI CCATGG 1 cut(s) 764
NdeI CATATG 1 cut(s) 580
NdeII GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
NlaIV GGNNCC 6 cut(s) 429, 510, 770, 771, 1060, 1061
NmeAIII GCCGAG 1 cut(s) 1465
NmuCI GTSAC 6 cut(s) 265, 310, 358, 679, 920, 952
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 4 cut(s) 253, 532, 578, 912
NspV TTCGAA 2 cut(s) 370, 1570
PaqCI CACCTGC 1 cut(s) 1654
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 4 cut(s) 90, 689, 1444, 1593
PflMI CCANNNNNTGG 2 cut(s) 629, 1033
PleI GAGTC 5 cut(s) 171, 272, 686, 956, 1375
PpsI GAGTC 5 cut(s) 171, 272, 686, 956, 1375
PpuMI RGGWCCY 2 cut(s) 18, 1059
Psp124BI GAGCTC 2 cut(s) 183, 219
Psp5II RGGWCCY 2 cut(s) 18, 1059
Psp6I CCWGG 2 cut(s) 772, 781
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 772, 781
PspN4I GGNNCC 6 cut(s) 429, 510, 770, 771, 1060, 1061
PspOMI GGGCCC 1 cut(s) 769
PspPI GGNCC 5 cut(s) 18, 769, 770, 859, 1059
PspPPI RGGWCCY 2 cut(s) 18, 1059
PsrI GAACNNNNNNTAC 2 cut(s) 1532, 1564
PstI CTGCAG 3 cut(s) 26, 1452, 1531
PstNI CAGNNNCTG 1 cut(s) 21
PsuI RGATCY 2 cut(s) 427, 1119
PvuII CAGCTG 1 cut(s) 1637
RsaI GTAC 3 cut(s) 106, 1550, 1641
RsaNI GTAC 3 cut(s) 105, 1549, 1640
RseI CAYNNNNRTG 3 cut(s) 545, 579, 1601
SacI GAGCTC 2 cut(s) 183, 219
SaqAI TTAA 5 cut(s) 222, 552, 1307, 1406, 1487
Sau3AI GATC 8 cut(s) 277, 427, 523, 537, 1119, 1264, 1321, 1495
Sau96I GGNCC 5 cut(s) 18, 769, 770, 859, 1059
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 5 cut(s) 172, 273, 687, 956, 1376
ScrFI CCNGG 2 cut(s) 774, 783
SduI GDGCHC 3 cut(s) 183, 219, 773
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 1 cut(s) 1230
SfcI CTRYAG 5 cut(s) 22, 328, 957, 1448, 1527
SfuI TTCGAA 2 cut(s) 370, 1570
SinI GGWCC 3 cut(s) 18, 859, 1059
SmiMI CAYNNNNRTG 3 cut(s) 545, 579, 1601
SsiI CCGC 3 cut(s) 512, 1117, 1589
SspMI CTAG 2 cut(s) 405, 986
SstI GAGCTC 2 cut(s) 183, 219
StyD4I CCNGG 2 cut(s) 772, 781
StyI CCWWGG 2 cut(s) 764, 985
TaaI ACNGT 5 cut(s) 68, 455, 685, 761, 1274
TaiI ACGT 2 cut(s) 312, 637
TaqI TCGA 9 cut(s) 137, 318, 370, 469, 664, 795, 977, 1515, 1570
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 4 cut(s) 90, 689, 1444, 1593
Tru1I TTAA 5 cut(s) 222, 552, 1307, 1406, 1487
Tru9I TTAA 5 cut(s) 222, 552, 1307, 1406, 1487
TscAI CASTG 3 cut(s) 613, 688, 808
TseFI GTSAC 6 cut(s) 265, 310, 358, 679, 920, 952
Tsp45I GTSAC 6 cut(s) 265, 310, 358, 679, 920, 952
TspDTI ATGAA 3 cut(s) 429, 476, 1331
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 3 cut(s) 613, 688, 808
Van91I CCANNNNNTGG 2 cut(s) 629, 1033
VpaK11BI GGWCC 3 cut(s) 18, 859, 1059
XapI RAATTY 2 cut(s) 373, 1576
XceI RCATGY 4 cut(s) 253, 532, 578, 912
XmaJI CCTAGG 1 cut(s) 985
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 2 cut(s) 405, 986
ZraI GACGTC 1 cut(s) 635
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.