Rw7G042660

cysteine--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
66423187 .. 66423993
807 bp
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UTR
Exon/CDS
Intron
Rw7G042660.1

Sequence Viewer

Length: 387 bp
ATGGGCACTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTACTACTTATCTGGGTTACTCTTTTGACGTACATGGTGGAGGGATGGACCTTCTGTTTCCCCCACATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAACAAAGTTATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCTGAAAAAATGTTCAAATCGCTATGGAACTTCTTTACAATTCGACAGAACATTGATAAATTCCCTCTGGTGAAATATCCTGTGCTGGTAATACATGGTTATGTGAACAATTTGATGCAAGGGAGAAGTTACAGCAGTCAATGGAGGATTGTTCAGCATCATTGGGAGTATTCAATGTCTAGTAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.85

Weight (kDa)

7.04

Isoelectric Point (pI)

70.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 2 - 88 2.4e-40 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 2 cut(s) 49, 78
AgsI TTSAA 2 cut(s) 214, 372
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 165
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 303, 364
BpiI GAAGAC 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 13, 173
BseBI CCWGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 13, 173
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 142
BsrI ACTGG 2 cut(s) 13, 173
Bst2UI CCWGG 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 96
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 6, 43
Cfr13I GGNCC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 2 cut(s) 48, 77
CviAII CATG 4 cut(s) 43, 80, 113, 293
CviJI RGCY 1 cut(s) 165
CviKI_1 RGCY 1 cut(s) 165
CviQI GTAC 2 cut(s) 48, 77
DdeI CTNAG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 16
FaeI CATG 4 cut(s) 46, 83, 116, 296
FatI CATG 4 cut(s) 42, 79, 112, 292
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 46, 83, 116, 296
HinfI GANTC 1 cut(s) 197
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 149, 304
Hpy188I TCNGA 2 cut(s) 132, 202
Hpy8I GTNNAC 2 cut(s) 149, 304
HpyAV CCTTC 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 36, 316
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 46, 83, 116, 296
LpnPI CCDG 7 cut(s) 3, 30, 44, 154, 251, 269, 291
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 303, 364
MabI ACCWGGT 1 cut(s) 16
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 62, 187, 326
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 123, 237, 257, 307, 382
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 3 cut(s) 80, 273, 336
MslI CAYNNNNRTG 2 cut(s) 117, 297
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
NlaIII CATG 4 cut(s) 46, 83, 116, 296
NmuCI GTSAC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 1 cut(s) 94
RsaI GTAC 2 cut(s) 49, 78
RsaNI GTAC 2 cut(s) 48, 77
RseI CAYNNNNRTG 2 cut(s) 117, 297
SatI GCNGC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 19, 78, 99, 167
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 2 cut(s) 303, 364
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 117, 297
Sse9I AATT 5 cut(s) 123, 237, 257, 307, 382
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 16
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 30, 241
TasI AATT 5 cut(s) 123, 237, 257, 307, 382
TatI WGTACW 1 cut(s) 47
TscAI CASTG 2 cut(s) 13, 43
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 2 cut(s) 13, 43
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 378
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.