Rh5BG567900

cysteine--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
89755537 .. 89756856
1320 bp
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UTR
Exon/CDS
Intron
Rh5BG567900.1

Sequence Viewer

Length: 213 bp
ATGGACCTTCTGTTTCCCCCACACGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAACAAAGTTATATAAGCTACTGGATACACAATGGTAAAGTGACTCGGTCACCAGCTCGATTATCCTCTATGTATTCTGTGAAGTGCAGTTGTTGGTTTGATATCCACATGAACATTGATAAATTCCCTCTGGTGAAATATCATGTGCTGGTATGA

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

8.41

Isoelectric Point (pI)

84.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 1 - 41 1.9e-10 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 179
AluBI AGCT 2 cut(s) 75, 113
AluI AGCT 2 cut(s) 75, 113
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 99, 202
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 23
BbvI GCAGC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 75
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 52
BsrI ACTGG 1 cut(s) 83
BssSI CACGAG 1 cut(s) 23
Bst2BI CACGAG 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 105
BstPI GGTNACC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 166, 200
CviJI RGCY 2 cut(s) 75, 113
CviKI_1 RGCY 2 cut(s) 75, 113
DdeI CTNAG 1 cut(s) 39
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 4
Eco91I GGTNACC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 105
EcoRV GATATC 1 cut(s) 160
FaeI CATG 2 cut(s) 169, 203
FaiI YATR 6 cut(s) 69, 71, 128, 167, 201, 211
FatI CATG 2 cut(s) 165, 199
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 169, 203
HinfI GANTC 1 cut(s) 100
HphI GGTGA 2 cut(s) 99, 202
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 169, 203
LpnPI CCDG 4 cut(s) 64, 123, 173, 191
Lsp1109I GCAGC 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 97, 105
MluCI AATT 2 cut(s) 33, 179
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 2 cut(s) 133, 195
MslI CAYNNNNRTG 1 cut(s) 27
NlaIII CATG 2 cut(s) 169, 203
NmuCI GTSAC 2 cut(s) 97, 105
PflFI GACNNNGTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 94
SetI ASST 3 cut(s) 9, 77, 115
SgeI CNNG 9 cut(s) 35, 37, 66, 91, 114, 122, 126, 178, 200
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 33, 179
TaqI TCGA 1 cut(s) 115
TaqII GACCGA 1 cut(s) 93
TasI AATT 2 cut(s) 33, 179
TseFI GTSAC 2 cut(s) 97, 105
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 97, 105
TspDTI ATGAA 2 cut(s) 45, 182
Tth111I GACNNNGTC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.