Rw3G011580

cysteine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000957
Physical Location & Seq
Reverse (-)
11252452 .. 11252871
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011580.1

Sequence Viewer

Length: 315 bp
ATGCAGATAGTGAAGCTGCATATAAGTGTCTCAAAGAGAGATGGGACCAAGCAGGAGGACATAATCCTCTATGGTCAATCTGTCAGAAGTAGCCGTACTGTTGATTTTGCTGCCCGTTTGCCTCGACTAAGAGCAATTGTGCTGCATAATCTGTTATTAGAAGATAATCGAGCTGGTGAGCGAGTCACTATTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGCACTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000741 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006417 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009559 GO:0009561 GO:0009570 GO:0009889 GO:0009987 GO:0010197 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0010941 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019222 GO:0019538 GO:0019752 GO:0030154 GO:0030554 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034248 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042407 GO:0043038 GO:0043039 GO:0043043 GO:0043067 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061024 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
DALR_2 tRNA-synt_1e tRNA-synt_1g

Protein Analysis

104

Amino Acids

11.73

Weight (kDa)

9.15

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 49 - 92 7.4e-10 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 16, 173
AluI AGCT 2 cut(s) 16, 173
Alw26I GTCTC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 16, 110, 142
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 188, 260
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 277
BarI GAAGNNNNNNTAC 2 cut(s) 79, 111
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 3, 97, 129
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 3 cut(s) 17, 111, 143
BlsI GCNGC 3 cut(s) 18, 112, 144
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 3 cut(s) 3, 97, 129
BslFI GGGAC 2 cut(s) 58, 275
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 58, 275
Bsp1286I GDGCHC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 100, 266
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 3, 97, 129
BstV2I GAAGAC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 275, 312
Cfr13I GGNCC 1 cut(s) 45
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 1 cut(s) 96
CviAII CATG 2 cut(s) 270, 312
CviJI RGCY 3 cut(s) 16, 93, 173
CviKI_1 RGCY 3 cut(s) 16, 93, 173
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 2 cut(s) 273, 315
FaiI YATR 9 cut(s) 21, 23, 62, 72, 147, 229, 271, 296, 313
FaqI GGGAC 2 cut(s) 58, 275
FatI CATG 2 cut(s) 269, 311
Fnu4HI GCNGC 3 cut(s) 17, 111, 143
Fsp4HI GCNGC 3 cut(s) 17, 111, 143
GluI GCNGC 3 cut(s) 17, 111, 143
Hin1II CATG 2 cut(s) 273, 315
HinfI GANTC 2 cut(s) 183, 194
HphI GGTGA 2 cut(s) 188, 260
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 239, 265
HpyCH4III ACNGT 2 cut(s) 100, 266
HpyCH4V TGCA 5 cut(s) 4, 19, 145, 239, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 2 cut(s) 273, 315
LpnPI CCDG 7 cut(s) 38, 159, 225, 244, 263, 272, 299
Lsp1109I GCAGC 3 cut(s) 3, 97, 129
MabI ACCWGGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 184
MboII GAAGA 3 cut(s) 173, 214, 293
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 3 cut(s) 49, 77, 132
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 269
NlaIII CATG 2 cut(s) 273, 315
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 18, 112, 144
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 3 cut(s) 17, 111, 143
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 277
SetI ASST 4 cut(s) 18, 175, 250, 288
SexAI ACCWGGT 1 cut(s) 285
SinI GGWCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 100, 266
TaqI TCGA 3 cut(s) 124, 169, 299
TasI AATT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 282, 312
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 16, 110, 142
Tsp45I GTSAC 1 cut(s) 184
TspRI CASTG 2 cut(s) 282, 312
VpaK11BI GGWCC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.