Rorug02G0298200

cysteine--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
33182640 .. 33183475
836 bp
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UTR
Exon/CDS
Intron
Rorug02G0298200.1

Sequence Viewer

Length: 489 bp
ATGAAGGACAAGGACAACGATTTTGAATATGACACTCCAGAGGTCTTGAAGACTTATGGAAAGAAAAGAACTGCTGCACAAGAACAGCCAAAGCAGAGAAAGAAAGCAGAACTGAAGCCGACAAGGAAGCTGCAGAAAGGGCAACAAGTGCAACACACAATCCAAATCAAAGATGTGAATTGCGACAAGTACACATGGAAAGCCTTAAAGCCTGAAGTAGCAAGCCACTACCAATATGCCTATTGGACAAGTAGAAATGGGTTAACGATGGTAACCAAAGCAGACATGAAGATTATCATACAAGAGCAAGATCTGGACGTTAATGTGATCAAAGCTTACAATGAAATATTACAGAATGAACTGAAAGAAAGGAACACTCAAATTGGATTACTGAACATCAAAGCAGCGTACTACACGAAAAGAAAGAGGTTGAGTTCCAAAAACAAGGCCAGAACAAACTCAAAGACAACTTTGAAGGCACGAAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

19.02

Weight (kDa)

9.88

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 134, 234
AfaI GTAC 2 cut(s) 191, 410
AgsI TTSAA 3 cut(s) 26, 49, 475
AluBI AGCT 2 cut(s) 130, 335
AluI AGCT 2 cut(s) 130, 335
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 74, 130, 404
ArsI GACNNNNNNTTYG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 61, 117, 416
BccI CCATC 1 cut(s) 262
BclI TGATCA 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 310
BisI GCNGC 3 cut(s) 75, 131, 405
BlsI GCNGC 3 cut(s) 76, 132, 406
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 21
BseXI GCAGC 3 cut(s) 61, 117, 416
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 449
BsnI GGCC 1 cut(s) 449
Bsp143I GATC 2 cut(s) 310, 327
BspANI GGCC 1 cut(s) 449
BspMAI CTGCAG 1 cut(s) 135
BssMI GATC 2 cut(s) 310, 327
BstAPI GCANNNNNTGC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 271
BstKTI GATC 2 cut(s) 313, 330
BstMBI GATC 2 cut(s) 310, 327
BstMWI GCNNNNNNNGC 2 cut(s) 139, 148
BstPI GGTNACC 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 61, 117, 416
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 190, 409
CviAII CATG 2 cut(s) 195, 286
CviJI RGCY 8 cut(s) 88, 118, 130, 203, 211, 225, 335, 449
CviKI_1 RGCY 8 cut(s) 88, 118, 130, 203, 211, 225, 335, 449
CviQI GTAC 2 cut(s) 190, 409
DpnI GATC 2 cut(s) 312, 329
DpnII GATC 2 cut(s) 310, 327
Eco57I CTGAAG 2 cut(s) 134, 234
Eco91I GGTNACC 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 271
FaeI CATG 2 cut(s) 198, 289
FaiI YATR 6 cut(s) 30, 57, 196, 237, 287, 299
FatI CATG 2 cut(s) 194, 285
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 3 cut(s) 75, 131, 405
Fsp4HI GCNGC 3 cut(s) 75, 131, 405
GluI GCNGC 3 cut(s) 75, 131, 405
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 449
Hin1II CATG 2 cut(s) 198, 289
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 333
HpaI GTTAAC 1 cut(s) 264
Hpy166II GTNNAC 2 cut(s) 192, 264
Hpy188III TCNNGA 3 cut(s) 38, 46, 314
Hpy8I GTNNAC 2 cut(s) 192, 264
HpyAV CCTTC 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 77, 133, 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 148
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 198, 289
Ksp22I TGATCA 1 cut(s) 327
KspAI GTTAAC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 310, 327
LpnPI CCDG 4 cut(s) 51, 225, 299, 463
Lsp1109I GCAGC 3 cut(s) 61, 117, 416
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 312, 329
MboI GATC 2 cut(s) 310, 327
MboII GAAGA 2 cut(s) 61, 301
MflI RGATCY 1 cut(s) 310
MluCI AATT 3 cut(s) 178, 381, 484
MnlI CCTC 2 cut(s) 34, 420
MseI TTAA 3 cut(s) 206, 263, 321
MwoI GCNNNNNNNGC 2 cut(s) 139, 148
NdeII GATC 2 cut(s) 310, 327
NlaIII CATG 2 cut(s) 198, 289
PkrI GCNGC 3 cut(s) 76, 132, 406
PspEI GGTNACC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 2 cut(s) 191, 410
RsaNI GTAC 2 cut(s) 190, 409
SaqAI TTAA 3 cut(s) 206, 263, 321
SatI GCNGC 3 cut(s) 75, 131, 405
Sau3AI GATC 2 cut(s) 310, 327
SetI ASST 5 cut(s) 45, 132, 321, 337, 431
SfcI CTRYAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 178, 381, 484
SspI AATATT 1 cut(s) 348
TaiI ACGT 1 cut(s) 321
TasI AATT 3 cut(s) 178, 381, 484
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 3 cut(s) 206, 263, 321
Tru9I TTAA 3 cut(s) 206, 263, 321
TseI GCWGC 3 cut(s) 74, 130, 404
TspDTI ATGAA 4 cut(s) 17, 302, 357, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.