Rh6AG384100

cysteine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
58376055 .. 58381712
5658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG384100.1

Sequence Viewer

Length: 1356 bp
ATGGGCACTCTGCTCAAGTGCTGCAGACCCTTCTTCTCAACGCGGACGCTTCAACTCGGAACGCACCGTTTCAACAACCCCAAAAGGAGAATCCGCTGCCTGAGCACTACTACCACTACTTCTTCAAGCCACTCCCAGCCGTCGATTGATGTCGCCACCAAATCGGAGAGTCCAGCGTCGTCGGAGCTCTGGCTGCACAACACAATGAGCAGGAAGAAGGAGCTCTTTAAGCCCAAAATTGAAGGCAAAGTGGGCATGTACGTCTGTGGAGTCACAGCTTACGATCTTAGCCATATCGGCCACGCTCGCGTCTACGTCACTTTCGATGTTCTCTACAGATATCTTAGGCATTTGGGCTATCAAGTCACTTATGTTCGAAATTTCACCGACGTTGATGACAAAATAATTGCCAGAGCAAATGAATTGGGAGAGGATCCAATCAGTTTGAGTAGGCGTTACTGTGAGGAGTTCAATCGAGATATGGAGTGTCTTCATTGCCTGCCTCCTTCTGTGGAACCGCGAGTGTCTGATCACATGCCACAGATCATTGATATGATTAAGCAGATTATTGAAAATGGACATGCCTATGGAGTTGATGGGGATGTGTATTTCAGTGTTGACAAGTTCCCAGATTATGGACGTCTATCTGGGCGAAAATTAGAAGATAATCGAGCCGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGGCCCTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTGCTGCTTATTTGGGTTACACTTTTGACATACATGGTGGAGGGATGGACCTTGTGTTTCCCCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAACAAAGTGATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCCGAGAAAATGTCGAAATCCCTAGGGAACTTCTTTACAATTCGGCAGGTTATAGACCTATACCATCCATTGGCTTTGCGACTTTTCTTATTAGGGACCCATTATCAGTCTCCAATCAACTACTCTGATGTGCAGCTTGAAAGCACTTCAGAGCGGATCTTCTACATATTTCAGACTTTATATGATTGTGAAAGTGTCGTAAGCCAGCATGATGTGCCAACCCTGAAGGATACCATTCCTCCTGAAATAGTGGAAAGCATCAATAAGTTCTACAATGTTTTTGTAACATCAATGTCGGACGATCTTCACAGTTCTGTTGTTTTTGGTGCATTATCAGACCCATTAAAAACTATGAATGATCTGCTACACACTCGCAAGGTATGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

51.49

Weight (kDa)

6.34

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 76 - 372 3e-131 tRNA synthetases class I (C) catalytic domain
tRNA-synt_1g PF09334 97 - 164 3.1e-06 tRNA synthetases class I (M)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
Acc36I ACCTGC 1 cut(s) 1006
AccB7I CCANNNNNTGG 2 cut(s) 635, 1039
AccBSI CCGCTC 1 cut(s) 1123
AccI GTMKAC 1 cut(s) 312
AccII CGCG 3 cut(s) 43, 309, 520
AciI CCGC 4 cut(s) 43, 94, 518, 1123
AclWI GGATC 3 cut(s) 428, 441, 1133
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 1101, 1214
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 635, 1039
AgsI TTSAA 8 cut(s) 53, 73, 126, 242, 472, 572, 699, 1109
AjnI CCWGG 2 cut(s) 778, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AluBI AGCT 5 cut(s) 187, 223, 278, 936, 1105
AluI AGCT 5 cut(s) 187, 223, 278, 936, 1105
Alw21I GWGCWC 3 cut(s) 107, 189, 225
Alw26I GTCTC 1 cut(s) 1083
AlwI GGATC 3 cut(s) 428, 441, 1133
AoxI GGCC 2 cut(s) 298, 775
ApaI GGGCCC 1 cut(s) 779
ApeKI GCWGC 6 cut(s) 21, 96, 193, 821, 911, 1102
ApoI RAATTY 1 cut(s) 379
AspA2I CCTAGG 1 cut(s) 991
AspS9I GGNCC 4 cut(s) 775, 776, 865, 1065
AsuHPI GGTGA 3 cut(s) 376, 689, 761
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 2 cut(s) 865, 1065
AvrII CCTAGG 1 cut(s) 991
BaeGI GKGCMC 2 cut(s) 8, 779
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 3 cut(s) 189, 225, 779
BbsI GAAGAC 2 cut(s) 482, 790
Bbv12I GWGCWC 3 cut(s) 107, 189, 225
BbvI GCAGC 6 cut(s) 8, 83, 180, 808, 898, 1114
BccI CCATC 3 cut(s) 590, 856, 1041
BceAI ACGGC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BciT130I CCWGG 2 cut(s) 780, 789
BciVI GTATCC 2 cut(s) 936, 1192
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 1083
BfaI CTAG 1 cut(s) 992
BfmI CTRYAG 3 cut(s) 22, 334, 963
BfuAI ACCTGC 1 cut(s) 1006
BfuI GTATCC 2 cut(s) 936, 1192
BglI GCCNNNNNGGC 1 cut(s) 297
BisI GCNGC 6 cut(s) 22, 97, 194, 822, 912, 1103
BlnI CCTAGG 1 cut(s) 991
BlsI GCNGC 6 cut(s) 23, 98, 195, 823, 913, 1104
Bme1390I CCNGG 2 cut(s) 780, 789
Bme18I GGWCC 2 cut(s) 865, 1065
BmgT120I GGNCC 4 cut(s) 775, 776, 865, 1065
BmiI GGNNCC 6 cut(s) 435, 516, 776, 777, 1066, 1067
BmrFI CCNGG 2 cut(s) 780, 789
BmsI GCATC 1 cut(s) 1236
BpiI GAAGAC 2 cut(s) 482, 790
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 3 cut(s) 770, 778, 991
BsaXI ACNNNNNCTCC 2 cut(s) 1192, 1222
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 1039
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 944
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 2 cut(s) 780, 789
BseDI CCNNGG 3 cut(s) 770, 778, 991
BseGI GGATG 3 cut(s) 607, 867, 1033
BseLI CCNNNNNNNGG 2 cut(s) 635, 1039
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 92, 914
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 2 cut(s) 8, 779
BseXI GCAGC 6 cut(s) 8, 83, 180, 808, 898, 1114
BseYI CCCAGC 1 cut(s) 135
BsgI GTGCAG 3 cut(s) 179, 826, 1121
Bsh1236I CGCG 3 cut(s) 43, 309, 520
BshFI GGCC 2 cut(s) 300, 777
BsiHKAI GWGCWC 3 cut(s) 107, 189, 225
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 2 cut(s) 776, 1078
BslI CCNNNNNNNGG 2 cut(s) 635, 1039
BsmAI GTCTC 1 cut(s) 1083
BsmFI GGGAC 2 cut(s) 776, 1078
BsnI GGCC 2 cut(s) 300, 777
Bsp119I TTCGAA 1 cut(s) 376
Bsp120I GGGCCC 1 cut(s) 775
Bsp1286I GDGCHC 5 cut(s) 8, 107, 189, 225, 779
Bsp143I GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 4 cut(s) 43, 94, 518, 1123
BspANI GGCC 2 cut(s) 300, 777
BspCNI CTCAG 2 cut(s) 93, 913
BspFNI CGCG 3 cut(s) 43, 309, 520
BspLI GGNNCC 6 cut(s) 435, 516, 776, 777, 1066, 1067
BspMAI CTGCAG 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 1006
BspPI GGATC 3 cut(s) 428, 441, 1133
BspT104I TTCGAA 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 1123
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 1 cut(s) 944
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 3 cut(s) 770, 778, 991
BssMI GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 2 cut(s) 770, 991
Bst2UI CCWGG 2 cut(s) 780, 789
Bst4CI ACNGT 5 cut(s) 68, 461, 691, 767, 1280
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 307, 500, 1175
BstDEI CTNAG 4 cut(s) 101, 287, 344, 900
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 3 cut(s) 607, 867, 1033
BstFNI CGCG 3 cut(s) 43, 309, 520
BstKTI GATC 7 cut(s) 286, 436, 532, 546, 1128, 1273, 1330
BstMAI GTCTC 1 cut(s) 1083
BstMBI GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
BstMWI GCNNNNNNNGC 9 cut(s) 102, 193, 229, 252, 297, 306, 722, 818, 1183
BstNI CCWGG 2 cut(s) 780, 789
BstNSI RCATGY 4 cut(s) 259, 538, 584, 918
BstSCI CCNGG 2 cut(s) 778, 787
BstSFI CTRYAG 3 cut(s) 22, 334, 963
BstSLI GKGCMC 2 cut(s) 8, 779
BstUI CGCG 3 cut(s) 43, 309, 520
BstV1I GCAGC 6 cut(s) 8, 83, 180, 808, 898, 1114
BstV2I GAAGAC 2 cut(s) 482, 790
BstX2I RGATCY 2 cut(s) 433, 1125
BstYI RGATCY 2 cut(s) 433, 1125
BsuI GTATCC 2 cut(s) 936, 1192
BsuRI GGCC 2 cut(s) 300, 777
BtgI CCRYGG 1 cut(s) 770
BtsCI GGATG 3 cut(s) 607, 867, 1033
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 3 cut(s) 619, 687, 814
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 3 cut(s) 307, 500, 1175
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 4 cut(s) 775, 776, 865, 1065
CseI GACGC 3 cut(s) 55, 165, 298
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 1 cut(s) 259
CviAII CATG 9 cut(s) 256, 535, 581, 771, 814, 851, 884, 915, 1178
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 101, 287, 344, 900
DpnI GATC 7 cut(s) 285, 435, 531, 545, 1127, 1272, 1329
DpnII GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
EaeI YGGCCR 1 cut(s) 298
Ecl136II GAGCTC 2 cut(s) 187, 223
Eco130I CCWWGG 2 cut(s) 770, 991
Eco24I GRGCYC 3 cut(s) 189, 225, 779
Eco32I GATATC 1 cut(s) 341
Eco47I GGWCC 2 cut(s) 865, 1065
Eco53kI GAGCTC 2 cut(s) 187, 223
Eco57I CTGAAG 2 cut(s) 1101, 1214
EcoICRI GAGCTC 2 cut(s) 187, 223
EcoO109I RGGNCCY 3 cut(s) 775, 776, 1065
EcoRII CCWGG 2 cut(s) 778, 787
EcoRV GATATC 1 cut(s) 341
EcoT14I CCWWGG 2 cut(s) 770, 991
EcoT38I GRGCYC 3 cut(s) 189, 225, 779
ErhI CCWWGG 2 cut(s) 770, 991
FaeI CATG 9 cut(s) 259, 538, 584, 774, 817, 854, 887, 918, 1181
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 2 cut(s) 776, 1078
FatI CATG 9 cut(s) 255, 534, 580, 770, 813, 850, 883, 914, 1177
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 22, 97, 194, 822, 912, 1103
FokI GGATG 3 cut(s) 614, 874, 1020
FriOI GRGCYC 3 cut(s) 189, 225, 779
Fsp4HI GCNGC 6 cut(s) 22, 97, 194, 822, 912, 1103
FspBI CTAG 1 cut(s) 992
GluI GCNGC 6 cut(s) 22, 97, 194, 822, 912, 1103
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 300, 777
HapII CCGG 1 cut(s) 675
HgaI GACGC 3 cut(s) 55, 165, 298
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 9 cut(s) 259, 538, 584, 774, 817, 854, 887, 918, 1181
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 6 cut(s) 90, 169, 270, 684, 695, 968
HpaII CCGG 1 cut(s) 675
HphI GGTGA 3 cut(s) 376, 689, 761
Hpy166II GTNNAC 4 cut(s) 313, 619, 752, 920
Hpy188III TCNNGA 2 cut(s) 476, 1211
Hpy8I GTNNAC 4 cut(s) 313, 619, 752, 920
Hpy99I CGWCG 4 cut(s) 145, 181, 184, 392
HpyAV CCTTC 7 cut(s) 40, 211, 236, 516, 740, 766, 1189
HpyCH4III ACNGT 5 cut(s) 68, 461, 691, 767, 1280
HpyCH4IV ACGT 4 cut(s) 261, 315, 390, 640
HpyCH4V TGCA 7 cut(s) 24, 196, 740, 807, 914, 1102, 1298
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 193, 229, 252, 297, 306, 722, 818, 1183
HpyF3I CTNAG 4 cut(s) 101, 287, 344, 900
HpySE526I ACGT 4 cut(s) 261, 315, 390, 640
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 9 cut(s) 259, 538, 584, 774, 817, 854, 887, 918, 1181
KflI GGGWCCC 1 cut(s) 1065
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
LmnI GCTCC 2 cut(s) 184, 220
Lsp1109I GCAGC 6 cut(s) 8, 83, 180, 808, 898, 1114
LweI GCATC 1 cut(s) 1236
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 1 cut(s) 992
MaeII ACGT 4 cut(s) 261, 315, 390, 640
MaeIII GTNAC 8 cut(s) 271, 316, 364, 455, 685, 833, 958, 1252
MalI GATC 7 cut(s) 285, 435, 531, 545, 1127, 1272, 1329
MbiI CCGCTC 1 cut(s) 1123
MboI GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
MboII GAAGA 9 cut(s) 25, 114, 226, 482, 674, 715, 795, 1120, 1265
MflI RGATCY 2 cut(s) 433, 1125
MhlI GDGCHC 5 cut(s) 8, 107, 189, 225, 779
MluCI AATT 7 cut(s) 237, 379, 405, 422, 656, 894, 1008
MlyI GAGTC 4 cut(s) 178, 279, 693, 962
MmeI TCCRAC 2 cut(s) 162, 1245
MnlI CCTC 5 cut(s) 424, 457, 513, 851, 1218
MseI TTAA 3 cut(s) 228, 558, 1313
MslI CAYNNNNRTG 3 cut(s) 551, 585, 888
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 2 cut(s) 780, 789
MvaI CCWGG 2 cut(s) 780, 789
MvnI CGCG 3 cut(s) 43, 309, 520
MwoI GCNNNNNNNGC 9 cut(s) 102, 193, 229, 252, 297, 306, 722, 818, 1183
NcoI CCATGG 1 cut(s) 770
NdeII GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
NlaIII CATG 9 cut(s) 259, 538, 584, 774, 817, 854, 887, 918, 1181
NlaIV GGNNCC 6 cut(s) 435, 516, 776, 777, 1066, 1067
NmuCI GTSAC 5 cut(s) 271, 316, 364, 685, 958
NspI RCATGY 4 cut(s) 259, 538, 584, 918
NspV TTCGAA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 2 cut(s) 90, 695
PflMI CCANNNNNTGG 2 cut(s) 635, 1039
PkrI GCNGC 6 cut(s) 23, 98, 195, 823, 913, 1104
PleI GAGTC 4 cut(s) 177, 278, 692, 962
PpsI GAGTC 4 cut(s) 177, 278, 692, 962
PpuMI RGGWCCY 1 cut(s) 1065
Psp124BI GAGCTC 2 cut(s) 189, 225
Psp5II RGGWCCY 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 778, 787
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 778, 787
PspN4I GGNNCC 6 cut(s) 435, 516, 776, 777, 1066, 1067
PspOMI GGGCCC 1 cut(s) 775
PspPI GGNCC 4 cut(s) 775, 776, 865, 1065
PspPPI RGGWCCY 1 cut(s) 1065
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 2 cut(s) 433, 1125
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 3 cut(s) 551, 585, 888
SacI GAGCTC 2 cut(s) 189, 225
SaqAI TTAA 3 cut(s) 228, 558, 1313
SatI GCNGC 6 cut(s) 22, 97, 194, 822, 912, 1103
Sau3AI GATC 7 cut(s) 283, 433, 529, 543, 1125, 1270, 1327
Sau96I GGNCC 4 cut(s) 775, 776, 865, 1065
SchI GAGTC 4 cut(s) 178, 279, 693, 962
ScrFI CCNGG 2 cut(s) 780, 789
SduI GDGCHC 5 cut(s) 8, 107, 189, 225, 779
SexAI ACCWGGT 1 cut(s) 787
SfaNI GCATC 1 cut(s) 1236
SfcI CTRYAG 3 cut(s) 22, 334, 963
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 2 cut(s) 865, 1065
SmiMI CAYNNNNRTG 3 cut(s) 551, 585, 888
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 7 cut(s) 237, 379, 405, 422, 656, 894, 1008
SsiI CCGC 4 cut(s) 43, 94, 518, 1123
SspMI CTAG 1 cut(s) 992
SstI GAGCTC 2 cut(s) 189, 225
StyD4I CCNGG 2 cut(s) 778, 787
StyI CCWWGG 2 cut(s) 770, 991
TaaI ACNGT 5 cut(s) 68, 461, 691, 767, 1280
TaiI ACGT 4 cut(s) 264, 318, 393, 643
TaqI TCGA 7 cut(s) 143, 324, 376, 475, 670, 801, 983
TasI AATT 7 cut(s) 237, 379, 405, 422, 656, 894, 1008
TfiI GAWTC 2 cut(s) 90, 695
Tru1I TTAA 3 cut(s) 228, 558, 1313
Tru9I TTAA 3 cut(s) 228, 558, 1313
TscAI CASTG 3 cut(s) 619, 694, 814
TseFI GTSAC 5 cut(s) 271, 316, 364, 685, 958
TseI GCWGC 6 cut(s) 21, 96, 193, 821, 911, 1102
Tsp45I GTSAC 5 cut(s) 271, 316, 364, 685, 958
TspDTI ATGAA 4 cut(s) 435, 482, 906, 1337
TspRI CASTG 3 cut(s) 619, 694, 814
Van91I CCANNNNNTGG 2 cut(s) 635, 1039
VpaK11BI GGWCC 2 cut(s) 865, 1065
XapI RAATTY 1 cut(s) 379
XceI RCATGY 4 cut(s) 259, 538, 584, 918
XmaJI CCTAGG 1 cut(s) 991
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 992
ZraI GACGTC 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.