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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39910 |
| fragaria_vesca | FvH4_7g23870 |
| malus_domestica | MD07G1212900.v1.1 |
| prunus_persica | Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1 |
| pyrus_communis | pycom07g19570 |
| rosa_chinensis | RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551 |
| rosa_laevigata | RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738 |
| rosa_multiflora | Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032 |
| rosa_roxburghii | Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170 |
| rosa_rugosa | Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200 |
| rosa_samantha | Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300 |
| rosa_wichuraiana | Rw1G031430 Rw7G029140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1225 |
| AccII | CGCG | 2 cut(s) | 227, 1167 |
| AciI | CCGC | 2 cut(s) | 125, 1210 |
| AclWI | GGATC | 3 cut(s) | 1170, 1256, 1269 |
| AcoI | YGGCCR | 1 cut(s) | 64 |
| AcsI | RAATTY | 2 cut(s) | 586, 596 |
| AcuI | CTGAAG | 1 cut(s) | 672 |
| AcyI | GRCGYC | 1 cut(s) | 1029 |
| AfaI | GTAC | 4 cut(s) | 112, 119, 1139, 1276 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1114 |
| AflIII | ACRYGT | 1 cut(s) | 787 |
| AgsI | TTSAA | 3 cut(s) | 336, 952, 1305 |
| AhlI | ACTAGT | 1 cut(s) | 1298 |
| AjiI | CACGTC | 1 cut(s) | 1083 |
| AjnI | CCWGG | 1 cut(s) | 1254 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 720, 752 |
| AluBI | AGCT | 6 cut(s) | 51, 382, 503, 553, 764, 1126 |
| AluI | AGCT | 6 cut(s) | 51, 382, 503, 553, 764, 1126 |
| Alw21I | GWGCWC | 1 cut(s) | 47 |
| Alw26I | GTCTC | 5 cut(s) | 200, 227, 651, 1051, 1058 |
| AlwI | GGATC | 3 cut(s) | 1170, 1256, 1269 |
| Ama87I | CYCGRG | 1 cut(s) | 878 |
| AoxI | GGCC | 1 cut(s) | 64 |
| ApeKI | GCWGC | 3 cut(s) | 135, 503, 542 |
| ApoI | RAATTY | 2 cut(s) | 586, 596 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 170, 202 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1038 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 4 cut(s) | 539, 604, 722, 1089 |
| AsuII | TTCGAA | 1 cut(s) | 31 |
| AvaI | CYCGRG | 1 cut(s) | 878 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BamHI | GGATCC | 1 cut(s) | 1261 |
| BbsI | GAAGAC | 2 cut(s) | 62, 180 |
| Bbv12I | GWGCWC | 1 cut(s) | 47 |
| BbvI | GCAGC | 3 cut(s) | 147, 490, 529 |
| BccI | CCATC | 1 cut(s) | 443 |
| BceAI | ACGGC | 1 cut(s) | 51 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 415, 449 |
| BciT130I | CCWGG | 1 cut(s) | 1256 |
| BciVI | GTATCC | 2 cut(s) | 154, 777 |
| BclI | TGATCA | 1 cut(s) | 637 |
| BcoDI | GTCTC | 5 cut(s) | 200, 227, 651, 1051, 1058 |
| BcuI | ACTAGT | 1 cut(s) | 1298 |
| BfaI | CTAG | 4 cut(s) | 360, 513, 959, 1299 |
| BfuI | GTATCC | 2 cut(s) | 154, 777 |
| BisI | GCNGC | 3 cut(s) | 136, 504, 543 |
| BlsI | GCNGC | 3 cut(s) | 137, 505, 544 |
| BmcAI | AGTACT | 1 cut(s) | 1276 |
| Bme1390I | CCNGG | 1 cut(s) | 1256 |
| BmeT110I | CYCGRG | 1 cut(s) | 878 |
| BmgBI | CACGTC | 1 cut(s) | 1083 |
| BmiI | GGNNCC | 2 cut(s) | 615, 1263 |
| BmrFI | CCNGG | 1 cut(s) | 1256 |
| BmsI | GCATC | 6 cut(s) | 475, 733, 864, 1005, 1143, 1191 |
| BpiI | GAAGAC | 2 cut(s) | 62, 180 |
| BpmI | CTGGAG | 1 cut(s) | 1082 |
| Bpu10I | CCTNAGC | 1 cut(s) | 554 |
| Bpu14I | TTCGAA | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 1073 |
| Bsa29I | ATCGAT | 2 cut(s) | 212, 1151 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1266 |
| BsaHI | GRCGYC | 1 cut(s) | 1029 |
| BsaI | GGTCTC | 1 cut(s) | 651 |
| BsaJI | CCNNGG | 1 cut(s) | 848 |
| BsaWI | WCCGGW | 1 cut(s) | 707 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 720, 750 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1114 |
| Bse1I | ACTGG | 2 cut(s) | 1065, 1213 |
| Bse3DI | GCAATG | 1 cut(s) | 513 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1266 |
| BseBI | CCWGG | 1 cut(s) | 1256 |
| BseCI | ATCGAT | 2 cut(s) | 212, 1151 |
| BseDI | CCNNGG | 1 cut(s) | 848 |
| BseGI | GGATG | 4 cut(s) | 260, 499, 1020, 1126 |
| BseJI | GATNNNNATC | 1 cut(s) | 1266 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1114 |
| BseMI | GCAATG | 1 cut(s) | 513 |
| BseMII | CTCAG | 4 cut(s) | 366, 568, 584, 1262 |
| BseNI | ACTGG | 2 cut(s) | 1065, 1213 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| BseXI | GCAGC | 3 cut(s) | 147, 490, 529 |
| Bsh1236I | CGCG | 2 cut(s) | 227, 1167 |
| BshFI | GGCC | 1 cut(s) | 66 |
| BshVI | ATCGAT | 2 cut(s) | 212, 1151 |
| BsiHKAI | GWGCWC | 1 cut(s) | 47 |
| BsiHKCI | CYCGRG | 1 cut(s) | 878 |
| BsiSI | CCGG | 2 cut(s) | 437, 708 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1114 |
| BsmAI | GTCTC | 5 cut(s) | 200, 227, 651, 1051, 1058 |
| BsmBI | CGTCTC | 1 cut(s) | 200 |
| BsmI | GAATGC | 1 cut(s) | 1018 |
| BsnI | GGCC | 1 cut(s) | 66 |
| Bso31I | GGTCTC | 1 cut(s) | 651 |
| BsoBI | CYCGRG | 1 cut(s) | 878 |
| Bsp119I | TTCGAA | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 241 |
| Bsp1407I | TGTACA | 1 cut(s) | 1137 |
| Bsp143I | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| Bsp68I | TCGCGA | 1 cut(s) | 1167 |
| BspACI | CCGC | 2 cut(s) | 125, 1210 |
| BspANI | GGCC | 1 cut(s) | 66 |
| BspCNI | CTCAG | 4 cut(s) | 367, 567, 583, 1263 |
| BspDI | ATCGAT | 2 cut(s) | 212, 1151 |
| BspFNI | CGCG | 2 cut(s) | 227, 1167 |
| BspHI | TCATGA | 1 cut(s) | 864 |
| BspLI | GGNNCC | 2 cut(s) | 615, 1263 |
| BspPI | GGATC | 3 cut(s) | 1170, 1256, 1269 |
| BspT104I | TTCGAA | 1 cut(s) | 31 |
| BspTNI | GGTCTC | 1 cut(s) | 651 |
| BsrDI | GCAATG | 1 cut(s) | 513 |
| BsrGI | TGTACA | 1 cut(s) | 1137 |
| BsrI | ACTGG | 2 cut(s) | 1065, 1213 |
| BssECI | CCNNGG | 1 cut(s) | 848 |
| BssMI | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| BssNI | GRCGYC | 1 cut(s) | 1029 |
| Bst2UI | CCWGG | 1 cut(s) | 1256 |
| Bst4CI | ACNGT | 6 cut(s) | 117, 368, 1039, 1069, 1230, 1279 |
| BstACI | GRCGYC | 1 cut(s) | 1029 |
| BstAUI | TGTACA | 1 cut(s) | 1137 |
| BstBI | TTCGAA | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 231 |
| BstDEI | CTNAG | 6 cut(s) | 104, 375, 554, 570, 929, 1271 |
| BstDSI | CCRYGG | 1 cut(s) | 848 |
| BstF5I | GGATG | 4 cut(s) | 260, 499, 1020, 1126 |
| BstFNI | CGCG | 2 cut(s) | 227, 1167 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 8 cut(s) | 58, 216, 414, 640, 715, 864, 1165, 1264 |
| BstMAI | GTCTC | 5 cut(s) | 200, 227, 651, 1051, 1058 |
| BstMBI | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 245, 509, 539, 629 |
| BstNI | CCWGG | 1 cut(s) | 1256 |
| BstNSI | RCATGY | 1 cut(s) | 791 |
| BstSCI | CCNGG | 1 cut(s) | 1254 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstUI | CGCG | 2 cut(s) | 227, 1167 |
| BstV1I | GCAGC | 3 cut(s) | 147, 490, 529 |
| BstV2I | GAAGAC | 2 cut(s) | 62, 180 |
| BstX2I | RGATCY | 1 cut(s) | 1261 |
| BstYI | RGATCY | 1 cut(s) | 1261 |
| Bsu15I | ATCGAT | 2 cut(s) | 212, 1151 |
| BsuI | GTATCC | 2 cut(s) | 154, 777 |
| BsuRI | GGCC | 1 cut(s) | 66 |
| BsuTUI | ATCGAT | 2 cut(s) | 212, 1151 |
| BtgI | CCRYGG | 1 cut(s) | 848 |
| BtgZI | GCGATG | 1 cut(s) | 1182 |
| BtrI | CACGTC | 1 cut(s) | 1083 |
| BtsCI | GGATG | 4 cut(s) | 260, 499, 1020, 1126 |
| BtsI | GCAGTG | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 4 cut(s) | 355, 487, 1016, 1220 |
| BtuMI | TCGCGA | 1 cut(s) | 1167 |
| Cac8I | GCNNGC | 1 cut(s) | 231 |
| CciI | TCATGA | 1 cut(s) | 864 |
| CfoI | GCGC | 1 cut(s) | 229 |
| ClaI | ATCGAT | 2 cut(s) | 212, 1151 |
| CseI | GACGC | 1 cut(s) | 1037 |
| Csp6I | GTAC | 4 cut(s) | 111, 118, 1138, 1275 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1098, 1133 |
| CviAII | CATG | 5 cut(s) | 62, 282, 307, 788, 865 |
| CviQI | GTAC | 4 cut(s) | 111, 118, 1138, 1275 |
| DdeI | CTNAG | 6 cut(s) | 104, 375, 554, 570, 929, 1271 |
| DpnI | GATC | 8 cut(s) | 57, 215, 413, 639, 714, 863, 1164, 1263 |
| DpnII | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| EaeI | YGGCCR | 1 cut(s) | 64 |
| EciI | GGCGGA | 1 cut(s) | 1199 |
| Eco31I | GGTCTC | 1 cut(s) | 651 |
| Eco57I | CTGAAG | 1 cut(s) | 672 |
| Eco88I | CYCGRG | 1 cut(s) | 878 |
| EcoRII | CCWGG | 1 cut(s) | 1254 |
| EcoT22I | ATGCAT | 1 cut(s) | 1020 |
| Esp3I | CGTCTC | 1 cut(s) | 200 |
| FaeI | CATG | 5 cut(s) | 65, 285, 310, 791, 868 |
| FatI | CATG | 5 cut(s) | 61, 281, 306, 787, 864 |
| FbaI | TGATCA | 1 cut(s) | 637 |
| FblI | GTMKAC | 1 cut(s) | 1225 |
| Fnu4HI | GCNGC | 3 cut(s) | 136, 504, 543 |
| FokI | GGATG | 4 cut(s) | 247, 506, 1027, 1133 |
| Fsp4HI | GCNGC | 3 cut(s) | 136, 504, 543 |
| FspBI | CTAG | 4 cut(s) | 360, 513, 959, 1299 |
| GlaI | GCGC | 1 cut(s) | 228 |
| GluI | GCNGC | 3 cut(s) | 136, 504, 543 |
| GsuI | CTGGAG | 1 cut(s) | 1082 |
| HaeIII | GGCC | 1 cut(s) | 66 |
| HapII | CCGG | 2 cut(s) | 437, 708 |
| HgaI | GACGC | 1 cut(s) | 1037 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1I | GRCGYC | 1 cut(s) | 1029 |
| Hin1II | CATG | 5 cut(s) | 65, 285, 310, 791, 868 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HincII | GTYRAC | 2 cut(s) | 1080, 1286 |
| HindII | GTYRAC | 2 cut(s) | 1080, 1286 |
| HindIII | AAGCTT | 1 cut(s) | 380 |
| HinfI | GANTC | 8 cut(s) | 100, 209, 286, 314, 453, 1145, 1235, 1246 |
| HpaII | CCGG | 2 cut(s) | 437, 708 |
| HphI | GGTGA | 4 cut(s) | 539, 604, 722, 1089 |
| Hpy166II | GTNNAC | 6 cut(s) | 113, 120, 467, 1080, 1226, 1286 |
| Hpy188I | TCNGA | 6 cut(s) | 55, 77, 85, 769, 1024, 1272 |
| Hpy188III | TCNNGA | 9 cut(s) | 269, 290, 650, 740, 865, 949, 1052, 1166, 1198 |
| Hpy8I | GTNNAC | 6 cut(s) | 113, 120, 467, 1080, 1226, 1286 |
| Hpy99I | CGWCG | 3 cut(s) | 918, 990, 1031 |
| HpyAV | CCTTC | 1 cut(s) | 251 |
| HpyCH4III | ACNGT | 6 cut(s) | 117, 368, 1039, 1069, 1230, 1279 |
| HpyCH4IV | ACGT | 5 cut(s) | 109, 256, 916, 988, 1082 |
| HpyCH4V | TGCA | 4 cut(s) | 488, 506, 1018, 1218 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 245, 509, 539, 629 |
| HpyF3I | CTNAG | 6 cut(s) | 104, 375, 554, 570, 929, 1271 |
| HpySE526I | ACGT | 5 cut(s) | 109, 256, 916, 988, 1082 |
| Hsp92I | GRCGYC | 1 cut(s) | 1029 |
| Hsp92II | CATG | 5 cut(s) | 65, 285, 310, 791, 868 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Ksp22I | TGATCA | 1 cut(s) | 637 |
| Kzo9I | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| LmnI | GCTCC | 1 cut(s) | 910 |
| Lsp1109I | GCAGC | 3 cut(s) | 147, 490, 529 |
| LweI | GCATC | 6 cut(s) | 475, 733, 864, 1005, 1143, 1191 |
| MaeI | CTAG | 4 cut(s) | 360, 513, 959, 1299 |
| MaeII | ACGT | 5 cut(s) | 109, 256, 916, 988, 1082 |
| MaeIII | GTNAC | 4 cut(s) | 171, 565, 602, 814 |
| MalI | GATC | 8 cut(s) | 57, 215, 413, 639, 714, 863, 1164, 1263 |
| MboI | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| MboII | GAAGA | 8 cut(s) | 50, 62, 180, 218, 243, 421, 871, 985 |
| MflI | RGATCY | 1 cut(s) | 1261 |
| MhlI | GDGCHC | 2 cut(s) | 47, 241 |
| MluCI | AATT | 5 cut(s) | 19, 26, 389, 586, 596 |
| MlyI | GAGTC | 3 cut(s) | 1154, 1244, 1255 |
| MnlI | CCTC | 9 cut(s) | 308, 391, 484, 849, 1008, 1068, 1191, 1199, 1252 |
| Mph1103I | ATGCAT | 1 cut(s) | 1020 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1038 |
| MseI | TTAA | 2 cut(s) | 443, 576 |
| MspA1I | CMGCKG | 1 cut(s) | 503 |
| MspI | CCGG | 2 cut(s) | 437, 708 |
| MspR9I | CCNGG | 1 cut(s) | 1256 |
| Mva1269I | GAATGC | 1 cut(s) | 1018 |
| MvaI | CCWGG | 1 cut(s) | 1256 |
| MvnI | CGCG | 2 cut(s) | 227, 1167 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 245, 509, 539, 629 |
| NdeII | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| NlaIII | CATG | 5 cut(s) | 65, 285, 310, 791, 868 |
| NlaIV | GGNNCC | 2 cut(s) | 615, 1263 |
| NruI | TCGCGA | 1 cut(s) | 1167 |
| NsiI | ATGCAT | 1 cut(s) | 1020 |
| NspI | RCATGY | 1 cut(s) | 791 |
| NspV | TTCGAA | 1 cut(s) | 31 |
| PagI | TCATGA | 1 cut(s) | 864 |
| PciI | ACATGT | 1 cut(s) | 787 |
| PctI | GAATGC | 1 cut(s) | 1018 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1038 |
| PfeI | GAWTC | 5 cut(s) | 100, 209, 286, 314, 453 |
| PkrI | GCNGC | 3 cut(s) | 137, 505, 544 |
| PleI | GAGTC | 3 cut(s) | 1153, 1243, 1254 |
| PpsI | GAGTC | 3 cut(s) | 1153, 1243, 1254 |
| PscI | ACATGT | 1 cut(s) | 787 |
| Psp6I | CCWGG | 1 cut(s) | 1254 |
| PspGI | CCWGG | 1 cut(s) | 1254 |
| PspN4I | GGNNCC | 2 cut(s) | 615, 1263 |
| PsuI | RGATCY | 1 cut(s) | 1261 |
| PvuII | CAGCTG | 1 cut(s) | 503 |
| RruI | TCGCGA | 1 cut(s) | 1167 |
| RsaI | GTAC | 4 cut(s) | 112, 119, 1139, 1276 |
| RsaNI | GTAC | 4 cut(s) | 111, 118, 1138, 1275 |
| SaqAI | TTAA | 2 cut(s) | 443, 576 |
| SatI | GCNGC | 3 cut(s) | 136, 504, 543 |
| Sau3AI | GATC | 8 cut(s) | 55, 213, 411, 637, 712, 861, 1162, 1261 |
| ScaI | AGTACT | 1 cut(s) | 1276 |
| SchI | GAGTC | 3 cut(s) | 1154, 1244, 1255 |
| ScrFI | CCNGG | 1 cut(s) | 1256 |
| SduI | GDGCHC | 2 cut(s) | 47, 241 |
| SfaNI | GCATC | 6 cut(s) | 475, 733, 864, 1005, 1143, 1191 |
| SfuI | TTCGAA | 1 cut(s) | 31 |
| SmlI | CTYRAG | 1 cut(s) | 1052 |
| SmoI | CTYRAG | 1 cut(s) | 1052 |
| SpeI | ACTAGT | 1 cut(s) | 1298 |
| Sse9I | AATT | 5 cut(s) | 19, 26, 389, 586, 596 |
| SsiI | CCGC | 2 cut(s) | 125, 1210 |
| SspMI | CTAG | 4 cut(s) | 360, 513, 959, 1299 |
| StyD4I | CCNGG | 1 cut(s) | 1254 |
| TaaI | ACNGT | 6 cut(s) | 117, 368, 1039, 1069, 1230, 1279 |
| TaiI | ACGT | 5 cut(s) | 112, 259, 919, 991, 1085 |
| TaqI | TCGA | 7 cut(s) | 31, 212, 414, 456, 841, 985, 1151 |
| TasI | AATT | 5 cut(s) | 19, 26, 389, 586, 596 |
| TatI | WGTACW | 3 cut(s) | 117, 1137, 1274 |
| TfiI | GAWTC | 5 cut(s) | 100, 209, 286, 314, 453 |
| Tru1I | TTAA | 2 cut(s) | 443, 576 |
| Tru9I | TTAA | 2 cut(s) | 443, 576 |
| TscAI | CASTG | 4 cut(s) | 355, 487, 1016, 1220 |
| TseI | GCWGC | 3 cut(s) | 135, 503, 542 |
| TspDTI | ATGAA | 6 cut(s) | 17, 50, 219, 249, 674, 881 |
| TspGWI | ACGGA | 1 cut(s) | 1181 |
| TspRI | CASTG | 4 cut(s) | 355, 487, 1016, 1220 |
| XapI | RAATTY | 2 cut(s) | 586, 596 |
| XceI | RCATGY | 1 cut(s) | 791 |
| XmiI | GTMKAC | 1 cut(s) | 1225 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1038 |
| XspI | CTAG | 4 cut(s) | 360, 513, 959, 1299 |
| ZrmI | AGTACT | 1 cut(s) | 1276 |
| Zsp2I | ATGCAT | 1 cut(s) | 1020 |