AT2G39910

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
16660596 .. 16663048
2453 bp
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UTR
Exon/CDS
Intron
AT2G39910.1

Sequence Viewer

Length: 1311 bp
ATGAACTTTACAAAAGAAAATTGTCAATTTCGAAAAATGTTGAGCACAAGCTCTGATCTTCATGGCCGTCTTCTCCGATTATCAGAACCAATAGCAGAGATTCTTAGACGTACACAGTACACACCGCAAGAGAGCAGCAAAGTATCCACCAAAGATATACTCTTGTCCTTGTTACCAAACACTTCGTCTTCTCGTCTCGCCAATGAAGAATCGATCAAAAGTCTCGCGCTTGCTTGTGCCCTTCTCGCTTCTTCACGTTCATCCACTCACGAACTTCTCTCATGGATTCCAGAAAACCTCTCTGTCATGGGGGAATCTACATTTTGGGAGATTTCAAGGGATTGTTTCAGTGATTTTTCTAGCAACAGTAATGCTGAGAAGCTTGTGGAATTGGTAGAGGATAGTGAGAAGATCGAAATGTTGCCGATAGTTTTGCCGGAGTTAAAAGATGGAATCGAAAAGAGTTCACTTGGTAAAGGCAGTGATGCAGAGGATGTTTCAGCTGCAATGGCTAGAACACCTGTTGGTTATGCTATACTTGCTGCTCACCAGCTCAGGTGGTTTGTTACTCAGGTTAAAAAACCGAATTTGGTGAAATTTTGTAACTTGGTGGTTCCTTGTGCTTTGACAGCACTTGATCATTGGTCTCCTGAAGTCAAAGGGCAGGGTATGATAACCTTTGTTCATCTTGCTAAAAATGTGAGTTCCGGTGATCTTGGTTTGTATGGAGATGTGGTTCTTGATGCGTGTTGCCAGAATATAGCTTCCGATGATGAGATTTGGATACATGTGGTAGAGTTATCTGTGCTTCTTGTTACTAAAATCCACCCAAATAATCCTCGAAGCCCGTGGTATGAGAAGATCATGAATGAGATGCTCGGGCATTTGGAACGCCAACCAAGAAATAAGGAGCGACGTATCACTTGGCTAAGATTTGTTGAGCCACTCTTGAACTCTCTAGGGCTTTTCTTACTTGCTCATTTTCGACGTATCTTCCCTCTTTTCTTTCAGTGGATGCATTCAGACGACGCCGAAACAGTTCTGTTGGTTCTTGAGAGACTGGAGACAGTTGTGAGGTTGACGTGGATTAGACACTCACCTGTGTTCCCAAGATTGGTGGATGAGCTTGTTTCCTTGTACAAAGAGTCATCGATGCGTAAGGATCGCGATGATATTAGACCTCTTATCCTCCGTATCTTGATGCTACTCCGCCAGTGCAAAGGTCTACGGTTTGAGTCAGCGTGGAGTCAATACCAGGAGGATCCAAATCTGAGTACTGTTAGTCAACATATATGGACTAGTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

49.75

Weight (kDa)

6.21

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1225
AccII CGCG 2 cut(s) 227, 1167
AciI CCGC 2 cut(s) 125, 1210
AclWI GGATC 3 cut(s) 1170, 1256, 1269
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 2 cut(s) 586, 596
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 1029
AfaI GTAC 4 cut(s) 112, 119, 1139, 1276
AfiI CCNNNNNNNGG 1 cut(s) 1114
AflIII ACRYGT 1 cut(s) 787
AgsI TTSAA 3 cut(s) 336, 952, 1305
AhlI ACTAGT 1 cut(s) 1298
AjiI CACGTC 1 cut(s) 1083
AjnI CCWGG 1 cut(s) 1254
AloI GAACNNNNNNTCC 2 cut(s) 720, 752
AluBI AGCT 6 cut(s) 51, 382, 503, 553, 764, 1126
AluI AGCT 6 cut(s) 51, 382, 503, 553, 764, 1126
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 5 cut(s) 200, 227, 651, 1051, 1058
AlwI GGATC 3 cut(s) 1170, 1256, 1269
Ama87I CYCGRG 1 cut(s) 878
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 135, 503, 542
ApoI RAATTY 2 cut(s) 586, 596
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 1038
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 4 cut(s) 539, 604, 722, 1089
AsuII TTCGAA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 878
BaeGI GKGCMC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 1261
BbsI GAAGAC 2 cut(s) 62, 180
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 147, 490, 529
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 51
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 1 cut(s) 1256
BciVI GTATCC 2 cut(s) 154, 777
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 5 cut(s) 200, 227, 651, 1051, 1058
BcuI ACTAGT 1 cut(s) 1298
BfaI CTAG 4 cut(s) 360, 513, 959, 1299
BfuI GTATCC 2 cut(s) 154, 777
BisI GCNGC 3 cut(s) 136, 504, 543
BlsI GCNGC 3 cut(s) 137, 505, 544
BmcAI AGTACT 1 cut(s) 1276
Bme1390I CCNGG 1 cut(s) 1256
BmeT110I CYCGRG 1 cut(s) 878
BmgBI CACGTC 1 cut(s) 1083
BmiI GGNNCC 2 cut(s) 615, 1263
BmrFI CCNGG 1 cut(s) 1256
BmsI GCATC 6 cut(s) 475, 733, 864, 1005, 1143, 1191
BpiI GAAGAC 2 cut(s) 62, 180
BpmI CTGGAG 1 cut(s) 1082
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 1073
Bsa29I ATCGAT 2 cut(s) 212, 1151
BsaBI GATNNNNATC 1 cut(s) 1266
BsaHI GRCGYC 1 cut(s) 1029
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 848
BsaWI WCCGGW 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 1114
Bse1I ACTGG 2 cut(s) 1065, 1213
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 1266
BseBI CCWGG 1 cut(s) 1256
BseCI ATCGAT 2 cut(s) 212, 1151
BseDI CCNNGG 1 cut(s) 848
BseGI GGATG 4 cut(s) 260, 499, 1020, 1126
BseJI GATNNNNATC 1 cut(s) 1266
BseLI CCNNNNNNNGG 1 cut(s) 1114
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 4 cut(s) 366, 568, 584, 1262
BseNI ACTGG 2 cut(s) 1065, 1213
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 3 cut(s) 147, 490, 529
Bsh1236I CGCG 2 cut(s) 227, 1167
BshFI GGCC 1 cut(s) 66
BshVI ATCGAT 2 cut(s) 212, 1151
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 2 cut(s) 437, 708
BslI CCNNNNNNNGG 1 cut(s) 1114
BsmAI GTCTC 5 cut(s) 200, 227, 651, 1051, 1058
BsmBI CGTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 1018
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 651
BsoBI CYCGRG 1 cut(s) 878
Bsp119I TTCGAA 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 47, 241
Bsp1407I TGTACA 1 cut(s) 1137
Bsp143I GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
Bsp68I TCGCGA 1 cut(s) 1167
BspACI CCGC 2 cut(s) 125, 1210
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 4 cut(s) 367, 567, 583, 1263
BspDI ATCGAT 2 cut(s) 212, 1151
BspFNI CGCG 2 cut(s) 227, 1167
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 2 cut(s) 615, 1263
BspPI GGATC 3 cut(s) 1170, 1256, 1269
BspT104I TTCGAA 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 1137
BsrI ACTGG 2 cut(s) 1065, 1213
BssECI CCNNGG 1 cut(s) 848
BssMI GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
BssNI GRCGYC 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 1256
Bst4CI ACNGT 6 cut(s) 117, 368, 1039, 1069, 1230, 1279
BstACI GRCGYC 1 cut(s) 1029
BstAUI TGTACA 1 cut(s) 1137
BstBI TTCGAA 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 6 cut(s) 104, 375, 554, 570, 929, 1271
BstDSI CCRYGG 1 cut(s) 848
BstF5I GGATG 4 cut(s) 260, 499, 1020, 1126
BstFNI CGCG 2 cut(s) 227, 1167
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 8 cut(s) 58, 216, 414, 640, 715, 864, 1165, 1264
BstMAI GTCTC 5 cut(s) 200, 227, 651, 1051, 1058
BstMBI GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
BstMWI GCNNNNNNNGC 4 cut(s) 245, 509, 539, 629
BstNI CCWGG 1 cut(s) 1256
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 1254
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 2 cut(s) 227, 1167
BstV1I GCAGC 3 cut(s) 147, 490, 529
BstV2I GAAGAC 2 cut(s) 62, 180
BstX2I RGATCY 1 cut(s) 1261
BstYI RGATCY 1 cut(s) 1261
Bsu15I ATCGAT 2 cut(s) 212, 1151
BsuI GTATCC 2 cut(s) 154, 777
BsuRI GGCC 1 cut(s) 66
BsuTUI ATCGAT 2 cut(s) 212, 1151
BtgI CCRYGG 1 cut(s) 848
BtgZI GCGATG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 1083
BtsCI GGATG 4 cut(s) 260, 499, 1020, 1126
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 4 cut(s) 355, 487, 1016, 1220
BtuMI TCGCGA 1 cut(s) 1167
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 864
CfoI GCGC 1 cut(s) 229
ClaI ATCGAT 2 cut(s) 212, 1151
CseI GACGC 1 cut(s) 1037
Csp6I GTAC 4 cut(s) 111, 118, 1138, 1275
CspCI CAANNNNNGTGG 2 cut(s) 1098, 1133
CviAII CATG 5 cut(s) 62, 282, 307, 788, 865
CviQI GTAC 4 cut(s) 111, 118, 1138, 1275
DdeI CTNAG 6 cut(s) 104, 375, 554, 570, 929, 1271
DpnI GATC 8 cut(s) 57, 215, 413, 639, 714, 863, 1164, 1263
DpnII GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 1 cut(s) 1199
Eco31I GGTCTC 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 1254
EcoT22I ATGCAT 1 cut(s) 1020
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 5 cut(s) 65, 285, 310, 791, 868
FatI CATG 5 cut(s) 61, 281, 306, 787, 864
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 1225
Fnu4HI GCNGC 3 cut(s) 136, 504, 543
FokI GGATG 4 cut(s) 247, 506, 1027, 1133
Fsp4HI GCNGC 3 cut(s) 136, 504, 543
FspBI CTAG 4 cut(s) 360, 513, 959, 1299
GlaI GCGC 1 cut(s) 228
GluI GCNGC 3 cut(s) 136, 504, 543
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 1 cut(s) 66
HapII CCGG 2 cut(s) 437, 708
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 1029
Hin1II CATG 5 cut(s) 65, 285, 310, 791, 868
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 1080, 1286
HindII GTYRAC 2 cut(s) 1080, 1286
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 8 cut(s) 100, 209, 286, 314, 453, 1145, 1235, 1246
HpaII CCGG 2 cut(s) 437, 708
HphI GGTGA 4 cut(s) 539, 604, 722, 1089
Hpy166II GTNNAC 6 cut(s) 113, 120, 467, 1080, 1226, 1286
Hpy188I TCNGA 6 cut(s) 55, 77, 85, 769, 1024, 1272
Hpy188III TCNNGA 9 cut(s) 269, 290, 650, 740, 865, 949, 1052, 1166, 1198
Hpy8I GTNNAC 6 cut(s) 113, 120, 467, 1080, 1226, 1286
Hpy99I CGWCG 3 cut(s) 918, 990, 1031
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 6 cut(s) 117, 368, 1039, 1069, 1230, 1279
HpyCH4IV ACGT 5 cut(s) 109, 256, 916, 988, 1082
HpyCH4V TGCA 4 cut(s) 488, 506, 1018, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 509, 539, 629
HpyF3I CTNAG 6 cut(s) 104, 375, 554, 570, 929, 1271
HpySE526I ACGT 5 cut(s) 109, 256, 916, 988, 1082
Hsp92I GRCGYC 1 cut(s) 1029
Hsp92II CATG 5 cut(s) 65, 285, 310, 791, 868
HspAI GCGC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
LmnI GCTCC 1 cut(s) 910
Lsp1109I GCAGC 3 cut(s) 147, 490, 529
LweI GCATC 6 cut(s) 475, 733, 864, 1005, 1143, 1191
MaeI CTAG 4 cut(s) 360, 513, 959, 1299
MaeII ACGT 5 cut(s) 109, 256, 916, 988, 1082
MaeIII GTNAC 4 cut(s) 171, 565, 602, 814
MalI GATC 8 cut(s) 57, 215, 413, 639, 714, 863, 1164, 1263
MboI GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
MboII GAAGA 8 cut(s) 50, 62, 180, 218, 243, 421, 871, 985
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 2 cut(s) 47, 241
MluCI AATT 5 cut(s) 19, 26, 389, 586, 596
MlyI GAGTC 3 cut(s) 1154, 1244, 1255
MnlI CCTC 9 cut(s) 308, 391, 484, 849, 1008, 1068, 1191, 1199, 1252
Mph1103I ATGCAT 1 cut(s) 1020
MroXI GAANNNNTTC 1 cut(s) 1038
MseI TTAA 2 cut(s) 443, 576
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 437, 708
MspR9I CCNGG 1 cut(s) 1256
Mva1269I GAATGC 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 1256
MvnI CGCG 2 cut(s) 227, 1167
MwoI GCNNNNNNNGC 4 cut(s) 245, 509, 539, 629
NdeII GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
NlaIII CATG 5 cut(s) 65, 285, 310, 791, 868
NlaIV GGNNCC 2 cut(s) 615, 1263
NruI TCGCGA 1 cut(s) 1167
NsiI ATGCAT 1 cut(s) 1020
NspI RCATGY 1 cut(s) 791
NspV TTCGAA 1 cut(s) 31
PagI TCATGA 1 cut(s) 864
PciI ACATGT 1 cut(s) 787
PctI GAATGC 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 5 cut(s) 100, 209, 286, 314, 453
PkrI GCNGC 3 cut(s) 137, 505, 544
PleI GAGTC 3 cut(s) 1153, 1243, 1254
PpsI GAGTC 3 cut(s) 1153, 1243, 1254
PscI ACATGT 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 1254
PspGI CCWGG 1 cut(s) 1254
PspN4I GGNNCC 2 cut(s) 615, 1263
PsuI RGATCY 1 cut(s) 1261
PvuII CAGCTG 1 cut(s) 503
RruI TCGCGA 1 cut(s) 1167
RsaI GTAC 4 cut(s) 112, 119, 1139, 1276
RsaNI GTAC 4 cut(s) 111, 118, 1138, 1275
SaqAI TTAA 2 cut(s) 443, 576
SatI GCNGC 3 cut(s) 136, 504, 543
Sau3AI GATC 8 cut(s) 55, 213, 411, 637, 712, 861, 1162, 1261
ScaI AGTACT 1 cut(s) 1276
SchI GAGTC 3 cut(s) 1154, 1244, 1255
ScrFI CCNGG 1 cut(s) 1256
SduI GDGCHC 2 cut(s) 47, 241
SfaNI GCATC 6 cut(s) 475, 733, 864, 1005, 1143, 1191
SfuI TTCGAA 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
SpeI ACTAGT 1 cut(s) 1298
Sse9I AATT 5 cut(s) 19, 26, 389, 586, 596
SsiI CCGC 2 cut(s) 125, 1210
SspMI CTAG 4 cut(s) 360, 513, 959, 1299
StyD4I CCNGG 1 cut(s) 1254
TaaI ACNGT 6 cut(s) 117, 368, 1039, 1069, 1230, 1279
TaiI ACGT 5 cut(s) 112, 259, 919, 991, 1085
TaqI TCGA 7 cut(s) 31, 212, 414, 456, 841, 985, 1151
TasI AATT 5 cut(s) 19, 26, 389, 586, 596
TatI WGTACW 3 cut(s) 117, 1137, 1274
TfiI GAWTC 5 cut(s) 100, 209, 286, 314, 453
Tru1I TTAA 2 cut(s) 443, 576
Tru9I TTAA 2 cut(s) 443, 576
TscAI CASTG 4 cut(s) 355, 487, 1016, 1220
TseI GCWGC 3 cut(s) 135, 503, 542
TspDTI ATGAA 6 cut(s) 17, 50, 219, 249, 674, 881
TspGWI ACGGA 1 cut(s) 1181
TspRI CASTG 4 cut(s) 355, 487, 1016, 1220
XapI RAATTY 2 cut(s) 586, 596
XceI RCATGY 1 cut(s) 791
XmiI GTMKAC 1 cut(s) 1225
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 4 cut(s) 360, 513, 959, 1299
ZrmI AGTACT 1 cut(s) 1276
Zsp2I ATGCAT 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.