Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

68421929 .. 68422749

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015598

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTAAGTCACTTGAAGCGCCAGCCTAAGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTAGAGCCACTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGAAGCAAGCTGATGACGATGAGACTGTTTTACTGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCGAAATCTTGTTATTCGTATACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTTGAAGCAGCCTGGGGCAAGCATAGGGATCATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTAAGAATTAACCTTATTGCTGCTTTTACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.17

Weight (kDa)

10.36

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	16, 179, 350
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	3 cut(s)	104, 149, 193
AluI	AGCT	3 cut(s)	104, 149, 193
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	263, 353, 449
ApoI	RAATTY	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	3 cut(s)	21, 42, 117
AsuII	TTCGAA	1 cut(s)	292
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	275, 365, 436
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	2 cut(s)	22, 43
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	3 cut(s)	264, 354, 450
BlsI	GCNGC	3 cut(s)	265, 355, 451
Bme1390I	CCNGG	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	358
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
Bpu14I	TTCGAA	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	241, 376
BseXI	GCAGC	3 cut(s)	275, 365, 436
BsmAI	GTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	275, 315, 373, 419
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	275, 315, 373, 419
BssNAI	GTATAC	1 cut(s)	311
BssSI	CACGAG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	166, 184
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	23, 147, 365
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	241, 376
BstH2I	RGCGCY	2 cut(s)	22, 43
BstHHI	GCGC	3 cut(s)	21, 42, 117
BstKTI	GATC	4 cut(s)	278, 318, 376, 422
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	275, 315, 373, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	341
BstSNI	TACGTA	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	275, 365, 436
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BstZ17I	GTATAC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	241, 376
Cac8I	GCNNGC	3 cut(s)	23, 147, 365
CfoI	GCGC	3 cut(s)	21, 42, 117
CviAII	CATG	2 cut(s)	51, 198
CviJI	RGCY	7 cut(s)	25, 55, 70, 104, 149, 193, 356
CviKI_1	RGCY	7 cut(s)	25, 55, 70, 104, 149, 193, 356
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	4 cut(s)	277, 317, 375, 421
DpnII	GATC	4 cut(s)	275, 315, 373, 419
Eco105I	TACGTA	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	2 cut(s)	54, 201
FaiI	YATR	9 cut(s)	52, 188, 199, 217, 219, 311, 369, 461, 463
FatI	CATG	2 cut(s)	50, 197
FauNDI	CATATG	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	264, 354, 450
FokI	GGATG	2 cut(s)	248, 363
Fsp4HI	GCNGC	3 cut(s)	264, 354, 450
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	3 cut(s)	20, 41, 116
GluI	GCNGC	3 cut(s)	264, 354, 450
HaeII	RGCGCY	2 cut(s)	22, 43
HhaI	GCGC	3 cut(s)	21, 42, 117
Hin1II	CATG	2 cut(s)	54, 201
Hin6I	GCGC	3 cut(s)	19, 40, 115
HinP1I	GCGC	3 cut(s)	19, 40, 115
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	311
HpyCH4III	ACNGT	2 cut(s)	166, 184
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	50, 253, 333, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	54, 201
HspAI	GCGC	3 cut(s)	19, 40, 115
Kzo9I	GATC	4 cut(s)	275, 315, 373, 419
LmnI	GCTCC	3 cut(s)	37, 327, 403
LpnPI	CCDG	5 cut(s)	35, 77, 97, 343, 370
Lsp1109I	GCAGC	3 cut(s)	275, 365, 436
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	8, 59, 96
MalI	GATC	4 cut(s)	277, 317, 375, 421
MboI	GATC	4 cut(s)	275, 315, 373, 419
MboII	GAAGA	3 cut(s)	285, 296, 429
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	275
MluCI	AATT	3 cut(s)	288, 393, 435
MnlI	CCTC	2 cut(s)	135, 412
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	5 cut(s)	5, 78, 135, 407, 438
MspR9I	CCNGG	1 cut(s)	358
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	4 cut(s)	275, 315, 373, 419
NlaIII	CATG	2 cut(s)	54, 201
NmuCI	GTSAC	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	265, 355, 451
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	5, 78, 135, 407, 438
SatI	GCNGC	3 cut(s)	264, 354, 450
Sau3AI	GATC	4 cut(s)	275, 315, 373, 419
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	6 cut(s)	66, 106, 151, 195, 230, 444
SfcI	CTRYAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	292
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	3 cut(s)	288, 393, 435
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	166, 184
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	292
TasI	AATT	3 cut(s)	288, 393, 435
Tru1I	TTAA	5 cut(s)	5, 78, 135, 407, 438
Tru9I	TTAA	5 cut(s)	5, 78, 135, 407, 438
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	263, 353, 449
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	252
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.