Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

5158371 .. 5160196

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG068700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGGGCTTTGAGCTGGGGTCTGATTACGGCAGTTAGGGCTTTGAGCCCAGAAAGGTCGTTACGAGAGCTCGATTATTCACCGGTTTCAGTGGAGCTCGCGCCCTTCTGCAGCGAAGCCCAGTTTGATTGGCTCATCGCTGAGGCTCAACAGCTCCAGCAGTTGTTCGTCATCATTTGGTTTGATAAAATTCTAGATGAGATGTTAAGTCACGTGGAGCGCCAGCCTAGGAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

79

Amino Acids

9.23

Weight (kDa)

4.97

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	214
AgeI	ACCGGT	1 cut(s)	82
AluBI	AGCT	4 cut(s)	15, 70, 97, 154
AluI	AGCT	4 cut(s)	15, 70, 97, 154
Alw21I	GWGCWC	2 cut(s)	72, 99
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	189
AsiGI	ACCGGT	1 cut(s)	82
AspA2I	CCTAGG	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	103, 222
AsuHPI	GGTGA	1 cut(s)	72
AvrII	CCTAGG	1 cut(s)	227
BanII	GRGCYC	3 cut(s)	50, 72, 99
BbrPI	CACGTG	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	72, 99
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	123
BceAI	ACGGC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	194, 228
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	1 cut(s)	112
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	72, 99
BsiSI	CCGG	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	50, 72, 99
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	99, 224
BstDEI	CTNAG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	2 cut(s)	103, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	99, 224
CfoI	GCGC	2 cut(s)	103, 222
Cfr10I	RCCGGY	1 cut(s)	82
CspAI	ACCGGT	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	141
Ecl136II	GAGCTC	2 cut(s)	70, 97
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	3 cut(s)	50, 72, 99
Eco53kI	GAGCTC	2 cut(s)	70, 97
Eco72I	CACGTG	1 cut(s)	214
EcoICRI	GAGCTC	2 cut(s)	70, 97
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	3 cut(s)	50, 72, 99
ErhI	CCWWGG	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	112
FriOI	GRGCYC	3 cut(s)	50, 72, 99
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	194, 228
GlaI	GCGC	2 cut(s)	102, 221
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	223
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	2 cut(s)	103, 222
Hin6I	GCGC	2 cut(s)	101, 220
HinP1I	GCGC	2 cut(s)	101, 220
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	213
HspAI	GCGC	2 cut(s)	101, 220
LmnI	GCTCC	3 cut(s)	94, 159, 217
LpnPI	CCDG	5 cut(s)	63, 96, 134, 170, 236
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	194, 228
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	60, 209
MhlI	GDGCHC	3 cut(s)	50, 72, 99
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	214
Psp124BI	GAGCTC	2 cut(s)	72, 99
PspCI	CACGTG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	113
SacI	GAGCTC	2 cut(s)	72, 99
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	112
SduI	GDGCHC	3 cut(s)	50, 72, 99
SetI	ASST	6 cut(s)	17, 59, 72, 99, 156, 216
SfcI	CTRYAG	1 cut(s)	109
Sse9I	AATT	1 cut(s)	189
SspMI	CTAG	2 cut(s)	194, 228
SstI	GAGCTC	2 cut(s)	72, 99
StyI	CCWWGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	193
XmaJI	CCTAGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	194, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.