Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

40234377 .. 40242176

Gene Structure 7800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATAGAATTAAATCCCAAATTAAAGTGTGGGAGTTTTATAACCATTTATGAACAACGGATGCCTATTCCGAGGGAAATGAGTTGTTTTTTAGAGTATTTCCTTATTATGAAGACTCTCTCTACCTTCCCCATCTCTGCATTGATGGTTGCTAAGAACTATCGAATTGATGTTACTGCAGGACGGATCACAAGGTTTCATGAGCTCATTGGAGCTATGAATGTCATTGAAAAACATGACAACATCCTTGTGAAGAACTACAATTCGATATCCGTGGAAATAGAGCATATTCCAGAATCCAATTATAGTTGCGCCCCTAAGAGAAGGCGCCAAGAGCTAAACAGTAACCTTATGGATACTTCTGGACTTTCTGGTCCATCAATAGATCGCCAATTCTGTTTAAGTCTTTATTTTTCCAAGAGATGTAATAGGAAATTGCCATATATTTTTGTAGTAAATGCCAATGGTTTGGTCTTTCTTCAAAGTAGGCTCACCCAAAGTAAGTGTGATACAAACCATGTCTCGCATCAGGGCAAACTCAATACACCTTGCCATTTTGTAAGACCATGTCTCCCACACATTACTCCTAGAATTATCTTCATTATTTTGGCTGGAAGCTTCAAAAGCAATGAAAATATCCTTTTCAAGGACATAAATTGCAGTAAAGGAACAAGGACAATAAGGTCAGTGAACCAAATTCAGATGTTTGATAAAATTCTAAATGAGATGTTAAGTCACGTGGAGCGCCAGCCTAGGAACAAGGAGCGTTGTGTTGCATGGCTTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTAGTGAGCATATTTCTCAAACAGATTGAAATAGTTATAAAGTTAACATGGATTAGGAAAACACCATATGTGGAAAGATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAATTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGTCTTTGTTGTTGATAGGTTTCGAAGTTTGGTTGTATTCCATGTTCACAACATATTTACCATATTTCAATTTTGGTAAACAATTGCATGTTTTGGGAAGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

45.63

Weight (kDa)

9.46

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	41, 935
AasI	GACNNNNNNGTC	2 cut(s)	372, 682
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	797
AclWI	GGATC	2 cut(s)	194, 1016
AcsI	RAATTY	3 cut(s)	696, 714, 1027
AcvI	CACGTG	1 cut(s)	739
AcyI	GRCGYC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	6 cut(s)	230, 482, 622, 646, 926, 1141
AhlI	ACTAGT	1 cut(s)	898
AjnI	CCWGG	1 cut(s)	1001
AluBI	AGCT	6 cut(s)	205, 215, 337, 618, 830, 875
AluI	AGCT	6 cut(s)	205, 215, 337, 618, 830, 875
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	3 cut(s)	526, 575, 881
AlwI	GGATC	2 cut(s)	194, 1016
ApeKI	GCWGC	1 cut(s)	998
ApoI	RAATTY	3 cut(s)	696, 714, 1027
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	4 cut(s)	314, 330, 747, 843
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	484
AsuII	TTCGAA	2 cut(s)	993, 1095
AvaII	GGWCC	1 cut(s)	374
AvrII	CCTAGG	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	207
BbrPI	CACGTG	1 cut(s)	739
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	3 cut(s)	139, 140, 385
BciT130I	CCWGG	1 cut(s)	1003
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	526, 575, 881
BcuI	ACTAGT	1 cut(s)	898
BfaI	CTAG	4 cut(s)	588, 753, 827, 899
BfmI	CTRYAG	2 cut(s)	177, 986
BfoI	RGCGCY	2 cut(s)	331, 748
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	797, 999
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	2 cut(s)	798, 1000
Bme1390I	CCNGG	1 cut(s)	1003
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	1003
BmsI	GCATC	4 cut(s)	51, 535, 858, 965
BpiI	GAAGAC	1 cut(s)	119
Bpu14I	TTCGAA	2 cut(s)	993, 1095
BsaAI	YACGTR	2 cut(s)	739, 790
BsaHI	GRCGYC	1 cut(s)	328
BsaJI	CCNNGG	4 cut(s)	71, 273, 752, 1002
BsaXI	ACNNNNNCTCC	4 cut(s)	555, 585, 1027, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	1003
BseDI	CCNNGG	4 cut(s)	71, 273, 752, 1002
BseGI	GGATG	4 cut(s)	66, 243, 873, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	1010
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	3 cut(s)	526, 575, 881
Bsp119I	TTCGAA	2 cut(s)	993, 1095
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	4 cut(s)	186, 385, 1021, 1064
BspACI	CCGC	1 cut(s)	797
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	2 cut(s)	181, 990
BspPI	GGATC	2 cut(s)	194, 1016
BspT104I	TTCGAA	2 cut(s)	993, 1095
BspT107I	GGYRCC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	634
BssECI	CCNNGG	4 cut(s)	71, 273, 752, 1002
BssMI	GATC	4 cut(s)	186, 385, 1021, 1064
BssNI	GRCGYC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	752
Bst2UI	CCWGG	1 cut(s)	1003
Bst4CI	ACNGT	2 cut(s)	344, 892
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBAI	YACGTR	2 cut(s)	739, 790
BstBI	TTCGAA	2 cut(s)	993, 1095
BstC8I	GCNNGC	3 cut(s)	749, 873, 1010
BstDEI	CTNAG	2 cut(s)	153, 318
BstDSI	CCRYGG	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	644
BstF5I	GGATG	4 cut(s)	66, 243, 873, 1024
BstH2I	RGCGCY	2 cut(s)	331, 748
BstHHI	GCGC	4 cut(s)	314, 330, 747, 843
BstKTI	GATC	4 cut(s)	189, 388, 1024, 1067
BstMAI	GTCTC	3 cut(s)	526, 575, 881
BstMBI	GATC	4 cut(s)	186, 385, 1021, 1064
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 624, 1040
BstNI	CCWGG	1 cut(s)	1003
BstNSI	RCATGY	1 cut(s)	1163
BstSCI	CCNGG	1 cut(s)	1001
BstSFI	CTRYAG	2 cut(s)	177, 986
BstSNI	TACGTA	1 cut(s)	790
BstV1I	GCAGC	1 cut(s)	1010
BstV2I	GAAGAC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	4 cut(s)	66, 243, 873, 1024
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	3 cut(s)	749, 873, 1010
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	4 cut(s)	314, 330, 747, 843
Cfr13I	GGNCC	1 cut(s)	374
CviAII	CATG	8 cut(s)	200, 236, 518, 567, 777, 945, 1114, 1160
DdeI	CTNAG	2 cut(s)	153, 318
DinI	GGCGCC	1 cut(s)	329
DpnI	GATC	4 cut(s)	188, 387, 1023, 1066
DpnII	GATC	4 cut(s)	186, 385, 1021, 1064
DrdI	GACNNNNNNGTC	2 cut(s)	372, 682
DseDI	GACNNNNNNGTC	2 cut(s)	372, 682
Ecl136II	GAGCTC	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	790
Eco130I	CCWWGG	1 cut(s)	752
Eco24I	GRGCYC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	739
EcoICRI	GAGCTC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	1001
EcoRV	GATATC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	329
EheI	GGCGCC	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	8 cut(s)	203, 239, 521, 570, 780, 948, 1117, 1163
FalI	AAGNNNNNCTT	1 cut(s)	1162
FatI	CATG	8 cut(s)	199, 235, 517, 566, 776, 944, 1113, 1159
FauNDI	CATATG	1 cut(s)	964
Fnu4HI	GCNGC	2 cut(s)	797, 999
FokI	GGATG	4 cut(s)	73, 230, 880, 1031
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	797, 999
FspBI	CTAG	4 cut(s)	588, 753, 827, 899
GlaI	GCGC	4 cut(s)	313, 329, 746, 842
GluI	GCNGC	2 cut(s)	797, 999
HaeII	RGCGCY	2 cut(s)	331, 748
HhaI	GCGC	4 cut(s)	314, 330, 747, 843
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	8 cut(s)	203, 239, 521, 570, 780, 948, 1117, 1163
Hin6I	GCGC	4 cut(s)	312, 328, 745, 841
HinP1I	GCGC	4 cut(s)	312, 328, 745, 841
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	616
HinfI	GANTC	2 cut(s)	115, 296
HpaI	GTTAAC	1 cut(s)	942
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	4 cut(s)	691, 942, 1119, 1151
Hpy188I	TCNGA	2 cut(s)	72, 702
Hpy188III	TCNNGA	3 cut(s)	200, 293, 363
Hpy8I	GTNNAC	4 cut(s)	691, 942, 1119, 1151
HpyAV	CCTTC	2 cut(s)	136, 318
HpyCH4III	ACNGT	2 cut(s)	344, 892
HpyCH4IV	ACGT	2 cut(s)	738, 789
HpyCH4V	TGCA	8 cut(s)	140, 179, 660, 776, 871, 978, 988, 1159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 624, 1040
HpyF3I	CTNAG	2 cut(s)	153, 318
HpySE526I	ACGT	2 cut(s)	738, 789
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	8 cut(s)	203, 239, 521, 570, 780, 948, 1117, 1163
HspAI	GCGC	4 cut(s)	312, 328, 745, 841
KasI	GGCGCC	1 cut(s)	327
KspAI	GTTAAC	1 cut(s)	942
Kzo9I	GATC	4 cut(s)	186, 385, 1021, 1064
LmnI	GCTCC	4 cut(s)	212, 742, 763, 1048
Lsp1109I	GCAGC	1 cut(s)	1010
LweI	GCATC	4 cut(s)	51, 535, 858, 965
MaeI	CTAG	4 cut(s)	588, 753, 827, 899
MaeII	ACGT	2 cut(s)	738, 789
MaeIII	GTNAC	5 cut(s)	172, 344, 734, 785, 822
MalI	GATC	4 cut(s)	188, 387, 1023, 1066
MboI	GATC	4 cut(s)	186, 385, 1021, 1064
MboII	GAAGA	5 cut(s)	124, 265, 470, 589, 1074
MfeI	CAATTG	2 cut(s)	1038, 1154
MhlI	GDGCHC	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	66, 861, 1057
MseI	TTAA	8 cut(s)	11, 23, 401, 731, 804, 861, 941, 1052
MslI	CAYNNNNRTG	2 cut(s)	248, 1017
MspR9I	CCNGG	1 cut(s)	1003
MunI	CAATTG	2 cut(s)	1038, 1154
MvaI	CCWGG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	3 cut(s)	334, 624, 1040
NarI	GGCGCC	1 cut(s)	328
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	4 cut(s)	186, 385, 1021, 1064
NlaIII	CATG	8 cut(s)	203, 239, 521, 570, 780, 948, 1117, 1163
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	734
NspI	RCATGY	1 cut(s)	1163
NspV	TTCGAA	2 cut(s)	993, 1095
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	296
PflFI	GACNNNGTC	1 cut(s)	567
PkrI	GCNGC	2 cut(s)	798, 1000
PleI	GAGTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	739
PmlI	CACGTG	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	2 cut(s)	739, 790
PsiI	TTATAA	2 cut(s)	41, 935
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	1001
PspCI	CACGTG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	1001
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	374
PsrI	GAACNNNNNNTAC	2 cut(s)	1100, 1132
PstI	CTGCAG	2 cut(s)	181, 990
PsyI	GACNNNGTC	1 cut(s)	567
RseI	CAYNNNNRTG	2 cut(s)	248, 1017
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	8 cut(s)	11, 23, 401, 731, 804, 861, 941, 1052
SatI	GCNGC	2 cut(s)	797, 999
Sau3AI	GATC	4 cut(s)	186, 385, 1021, 1064
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	1003
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	4 cut(s)	51, 535, 858, 965
SfcI	CTRYAG	2 cut(s)	177, 986
SfoI	GGCGCC	1 cut(s)	329
SfuI	TTCGAA	2 cut(s)	993, 1095
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	248, 1017
SnaBI	TACGTA	1 cut(s)	790
SpeI	ACTAGT	1 cut(s)	898
SsiI	CCGC	1 cut(s)	797
SspDI	GGCGCC	1 cut(s)	327
SspMI	CTAG	4 cut(s)	588, 753, 827, 899
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	1001
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	2 cut(s)	344, 892
TaiI	ACGT	2 cut(s)	741, 792
TaqI	TCGA	4 cut(s)	163, 266, 993, 1095
TauI	GCSGC	1 cut(s)	799
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	8 cut(s)	11, 23, 401, 731, 804, 861, 941, 1052
Tru9I	TTAA	8 cut(s)	11, 23, 401, 731, 804, 861, 941, 1052
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	1 cut(s)	998
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	6 cut(s)	66, 125, 188, 233, 589, 645
TspGWI	ACGGA	3 cut(s)	73, 199, 262
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	644
XapI	RAATTY	3 cut(s)	696, 714, 1027
XceI	RCATGY	1 cut(s)	1163
XmaJI	CCTAGG	1 cut(s)	752
XspI	CTAG	4 cut(s)	588, 753, 827, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.