Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

22347320 .. 22358657

Gene Structure 11338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGTTCAAATTGGGCAGACTTACTCTTCACTTCTCCAAACTGGTGGTGCGATGCAAACTCTAATAAAAGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTATGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTTAGGCACATTTTCCCTTTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTAGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCAAAATCTTGTTATTCGTATACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTTCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTAAGAATTAACCTTATTGCTGCTTTTATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

22.32

Weight (kDa)

9.26

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	81, 393
AgsI	TTSAA	3 cut(s)	9, 284, 398
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	197, 242, 298
AluI	AGCT	3 cut(s)	197, 242, 298
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	476
ApeKI	GCWGC	3 cut(s)	368, 458, 554
ApoI	RAATTY	2 cut(s)	81, 393
Asp700I	GAANNNNTTC	1 cut(s)	393
AspA2I	CCTAGG	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	114, 135
AsuII	TTCGAA	1 cut(s)	453
AvrII	CCTAGG	1 cut(s)	119
BauI	CACGAG	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	380, 470, 541
BccI	CCATC	1 cut(s)	438
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	120, 194
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	2 cut(s)	115, 136
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	4 cut(s)	164, 369, 459, 555
BlnI	CCTAGG	1 cut(s)	119
BlsI	GCNGC	4 cut(s)	165, 370, 460, 556
Bme1390I	CCNGG	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	43, 225
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
Bpu14I	TTCGAA	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	119, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	2 cut(s)	47, 270
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	119, 462
BseGI	GGATG	3 cut(s)	240, 346, 484
BseNI	ACTGG	2 cut(s)	47, 270
BseXI	GCAGC	3 cut(s)	380, 470, 541
BsmAI	GTCTC	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	380, 420, 481, 524
BspACI	CCGC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	476
BspT104I	TTCGAA	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	47, 270
BssECI	CCNNGG	2 cut(s)	119, 462
BssMI	GATC	4 cut(s)	380, 420, 481, 524
BssNAI	GTATAC	1 cut(s)	416
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	119
Bst1107I	GTATAC	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	259, 289
Bst6I	CTCTTC	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	3 cut(s)	116, 240, 470
BstF5I	GGATG	3 cut(s)	240, 346, 484
BstH2I	RGCGCY	2 cut(s)	115, 136
BstHHI	GCGC	2 cut(s)	114, 135
BstKTI	GATC	4 cut(s)	383, 423, 484, 527
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	380, 420, 481, 524
BstNI	CCWGG	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	380, 470, 541
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	380
BstZ17I	GTATAC	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	240, 346, 484
Cac8I	GCNNGC	3 cut(s)	116, 240, 470
CfoI	GCGC	2 cut(s)	114, 135
CviAII	CATG	2 cut(s)	144, 303
CviJI	RGCY	7 cut(s)	118, 148, 163, 197, 242, 298, 461
CviKI_1	RGCY	7 cut(s)	118, 148, 163, 197, 242, 298, 461
DpnI	GATC	4 cut(s)	382, 422, 483, 526
DpnII	GATC	4 cut(s)	380, 420, 481, 524
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	147, 306
FaiI	YATR	9 cut(s)	145, 156, 293, 304, 322, 324, 416, 566, 568
FatI	CATG	2 cut(s)	143, 302
FauNDI	CATATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	4 cut(s)	164, 369, 459, 555
FokI	GGATG	3 cut(s)	247, 353, 491
Fsp4HI	GCNGC	4 cut(s)	164, 369, 459, 555
FspBI	CTAG	2 cut(s)	120, 194
GlaI	GCGC	2 cut(s)	113, 134
GluI	GCNGC	4 cut(s)	164, 369, 459, 555
HaeII	RGCGCY	2 cut(s)	115, 136
HhaI	GCGC	2 cut(s)	114, 135
Hin1II	CATG	2 cut(s)	147, 306
Hin6I	GCGC	2 cut(s)	112, 133
HinP1I	GCGC	2 cut(s)	112, 133
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	416
HpyCH4III	ACNGT	2 cut(s)	259, 289
HpyCH4V	TGCA	6 cut(s)	56, 143, 238, 358, 438, 448
Hsp92II	CATG	2 cut(s)	147, 306
HspAI	GCGC	2 cut(s)	112, 133
Kzo9I	GATC	4 cut(s)	380, 420, 481, 524
LmnI	GCTCC	3 cut(s)	109, 130, 432
LpnPI	CCDG	7 cut(s)	28, 128, 170, 251, 448, 460, 475
Lsp1109I	GCAGC	3 cut(s)	380, 470, 541
LweI	GCATC	2 cut(s)	43, 225
MaeI	CTAG	2 cut(s)	120, 194
MaeIII	GTNAC	2 cut(s)	101, 189
MalI	GATC	4 cut(s)	382, 422, 483, 526
MboI	GATC	4 cut(s)	380, 420, 481, 524
MboII	GAAGA	4 cut(s)	19, 390, 401, 534
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	5 cut(s)	10, 81, 393, 498, 540
MnlI	CCTC	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	5 cut(s)	98, 171, 228, 512, 543
MslI	CAYNNNNRTG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	4 cut(s)	380, 420, 481, 524
NlaIII	CATG	2 cut(s)	147, 306
NmuCI	GTSAC	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	393
PkrI	GCNGC	4 cut(s)	165, 370, 460, 556
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	98, 171, 228, 512, 543
SatI	GCNGC	4 cut(s)	164, 369, 459, 555
Sau3AI	GATC	4 cut(s)	380, 420, 481, 524
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	6 cut(s)	74, 199, 244, 300, 335, 549
SfaNI	GCATC	2 cut(s)	43, 225
SfcI	CTRYAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	5 cut(s)	10, 81, 393, 498, 540
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	2 cut(s)	120, 194
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	259, 289
TaqI	TCGA	1 cut(s)	453
TasI	AATT	5 cut(s)	10, 81, 393, 498, 540
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	5 cut(s)	98, 171, 228, 512, 543
Tru9I	TTAA	5 cut(s)	98, 171, 228, 512, 543
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	368, 458, 554
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	357
XapI	RAATTY	2 cut(s)	81, 393
XmaJI	CCTAGG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	2 cut(s)	120, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.