Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

11877777 .. 11879305

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCACTTCAGCAAGTCAGATGAGATGTTAAGTCACGTGGAGCGCCAGCCTAGGAACAAGGAGCGTTGTGTTGCATGGCTTCGTTATGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTAGTATTATTTAATTCATCGCTTCGCTTTATGAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTTGTGAAGAAATTCGAAATCTTGTTATTCGTAAACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTAAGAATTAACCTTATTGCTGCTTTTACCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.17

Weight (kDa)

9.45

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	128, 173
AluI	AGCT	2 cut(s)	128, 173
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	266, 356, 452
ApoI	RAATTY	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	291
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	45, 141
AsuII	TTCGAA	2 cut(s)	295, 351
AvrII	CCTAGG	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	278, 368, 439
BccI	CCATC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	179
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	3 cut(s)	51, 125, 197
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	46
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	4 cut(s)	95, 267, 357, 453
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	4 cut(s)	96, 268, 358, 454
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	156
Bpu14I	TTCGAA	2 cut(s)	295, 351
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	50, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	50, 360
BseGI	GGATG	3 cut(s)	171, 244, 382
BseXI	GCAGC	3 cut(s)	278, 368, 439
BsmAI	GTCTC	1 cut(s)	179
Bsp119I	TTCGAA	2 cut(s)	295, 351
Bsp143I	GATC	4 cut(s)	278, 318, 379, 422
BspACI	CCGC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	2 cut(s)	295, 351
BssECI	CCNNGG	2 cut(s)	50, 360
BssMI	GATC	4 cut(s)	278, 318, 379, 422
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	37
BstBI	TTCGAA	2 cut(s)	295, 351
BstC8I	GCNNGC	3 cut(s)	47, 171, 368
BstF5I	GGATG	3 cut(s)	171, 244, 382
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	45, 141
BstKTI	GATC	4 cut(s)	281, 321, 382, 425
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	4 cut(s)	278, 318, 379, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	278, 368, 439
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	171, 244, 382
Cac8I	GCNNGC	3 cut(s)	47, 171, 368
CfoI	GCGC	2 cut(s)	45, 141
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	6 cut(s)	49, 79, 94, 128, 173, 359
CviKI_1	RGCY	6 cut(s)	49, 79, 94, 128, 173, 359
DpnI	GATC	4 cut(s)	280, 320, 381, 424
DpnII	GATC	4 cut(s)	278, 318, 379, 422
Eco130I	CCWWGG	1 cut(s)	50
Eco72I	CACGTG	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	78
FaiI	YATR	5 cut(s)	76, 87, 227, 464, 466
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	95, 267, 357, 453
FokI	GGATG	3 cut(s)	178, 251, 389
Fsp4HI	GCNGC	4 cut(s)	95, 267, 357, 453
FspBI	CTAG	3 cut(s)	51, 125, 197
GlaI	GCGC	2 cut(s)	44, 140
GluI	GCNGC	4 cut(s)	95, 267, 357, 453
HaeII	RGCGCY	1 cut(s)	46
HhaI	GCGC	2 cut(s)	45, 141
Hin1II	CATG	1 cut(s)	78
Hin6I	GCGC	2 cut(s)	43, 139
HinP1I	GCGC	2 cut(s)	43, 139
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	6 cut(s)	4, 74, 169, 256, 336, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	78
HspAI	GCGC	2 cut(s)	43, 139
Kzo9I	GATC	4 cut(s)	278, 318, 379, 422
LmnI	GCTCC	4 cut(s)	40, 61, 330, 406
LpnPI	CCDG	6 cut(s)	59, 101, 121, 346, 358, 373
Lsp1109I	GCAGC	3 cut(s)	278, 368, 439
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	3 cut(s)	51, 125, 197
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	32, 120
MalI	GATC	4 cut(s)	280, 320, 381, 424
MboI	GATC	4 cut(s)	278, 318, 379, 422
MboII	GAAGA	3 cut(s)	288, 299, 432
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	4 cut(s)	208, 291, 396, 438
MnlI	CCTC	3 cut(s)	159, 222, 415
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	6 cut(s)	29, 102, 159, 207, 410, 441
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	278, 318, 379, 422
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	32
NspV	TTCGAA	2 cut(s)	295, 351
PdmI	GAANNNNTTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	96, 268, 358, 454
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	359
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	6 cut(s)	29, 102, 159, 207, 410, 441
SatI	GCNGC	4 cut(s)	95, 267, 357, 453
Sau3AI	GATC	4 cut(s)	278, 318, 379, 422
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	5 cut(s)	39, 130, 175, 233, 447
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	344
SfuI	TTCGAA	2 cut(s)	295, 351
SmiMI	CAYNNNNRTG	1 cut(s)	375
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	4 cut(s)	208, 291, 396, 438
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	3 cut(s)	51, 125, 197
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	295, 351
TasI	AATT	4 cut(s)	208, 291, 396, 438
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	6 cut(s)	29, 102, 159, 207, 410, 441
Tru9I	TTAA	6 cut(s)	29, 102, 159, 207, 410, 441
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	3 cut(s)	266, 356, 452
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	201, 255
XapI	RAATTY	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	3 cut(s)	51, 125, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.