Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

45357775 .. 45360171

Gene Structure 2397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATGACTCCTTGTGTGTTTTCTTTCAGGGGCAAGGCATGATAAGCTTTATACATATCACGAAAAGTGTAGATGCTGCTGAGCTAGCTTGGTGTCAAGATGCAATTCTTGATGCATGCTGCCAGAATATTGCTTCTAGTGACGAGATATGGCATCTTGTGGTGGAGATGTCAGTACTTGTGGTGACTTGTACCCAGCAGAGCAATCCTCGTAGTGCATGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTGGAGCCGCTCTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCATGCTGATGACGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCACTGAAAAGATCTCGTGAAGAAATTAGAAATCTTGTTATTCGTATACTGATCCTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGCTTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

26.81

Weight (kDa)

6.45

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	565, 626
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	2 cut(s)	177, 193
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	611
AluBI	AGCT	5 cut(s)	48, 85, 89, 347, 448
AluI	AGCT	5 cut(s)	48, 85, 89, 347, 448
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	565, 626
ApeKI	GCWGC	4 cut(s)	77, 120, 518, 608
ApoI	RAATTY	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	264, 285, 360
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	603
AsuNHI	GCTAGC	1 cut(s)	85
AvrII	CCTAGG	1 cut(s)	269
BauI	CACGAG	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	64, 107, 530, 620
BccI	CCATC	1 cut(s)	588
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	4 cut(s)	86, 138, 270, 344
BfmI	CTRYAG	1 cut(s)	596
BfoI	RGCGCY	2 cut(s)	265, 286
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	5 cut(s)	78, 121, 314, 519, 609
BlnI	CCTAGG	1 cut(s)	269
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	79, 122, 315, 520, 610
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	5 cut(s)	64, 91, 103, 163, 375
BmtI	GCTAGC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
Bpu1102I	GCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	603
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	269, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	269, 612
BseGI	GGATG	4 cut(s)	10, 390, 496, 634
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	64, 107, 530, 620
BseYI	CCCAGC	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	530, 570, 631, 674
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	565, 626
BspT104I	TTCGAA	1 cut(s)	603
BsrBI	CCGCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	269, 612
BssMI	GATC	4 cut(s)	530, 570, 631, 674
BssNAI	GTATAC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	409, 439
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	5 cut(s)	87, 118, 266, 390, 620
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	10, 390, 496, 634
BstH2I	RGCGCY	2 cut(s)	265, 286
BstHHI	GCGC	3 cut(s)	264, 285, 360
BstKTI	GATC	4 cut(s)	533, 573, 634, 677
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	530, 570, 631, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 86, 650
BstNI	CCWGG	1 cut(s)	613
BstNSI	RCATGY	2 cut(s)	120, 392
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	596
BstV1I	GCAGC	4 cut(s)	64, 107, 530, 620
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BstZ17I	GTATAC	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	10, 390, 496, 634
BtsIMutI	CAGTG	1 cut(s)	521
Cac8I	GCNNGC	5 cut(s)	87, 118, 266, 390, 620
CfoI	GCGC	3 cut(s)	264, 285, 360
Csp6I	GTAC	2 cut(s)	176, 192
CviAII	CATG	6 cut(s)	40, 117, 219, 294, 389, 453
CviQI	GTAC	2 cut(s)	176, 192
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	532, 572, 633, 676
DpnII	GATC	4 cut(s)	530, 570, 631, 674
Eco130I	CCWWGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	2 cut(s)	118, 390
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	6 cut(s)	43, 120, 222, 297, 392, 456
FatI	CATG	6 cut(s)	39, 116, 218, 293, 388, 452
FauNDI	CATATG	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	5 cut(s)	78, 121, 314, 519, 609
FokI	GGATG	4 cut(s)	17, 397, 503, 641
Fsp4HI	GCNGC	5 cut(s)	78, 121, 314, 519, 609
FspBI	CTAG	4 cut(s)	86, 138, 270, 344
GlaI	GCGC	3 cut(s)	263, 284, 359
GluI	GCNGC	5 cut(s)	78, 121, 314, 519, 609
GsaI	CCCAGC	1 cut(s)	199
HaeII	RGCGCY	2 cut(s)	265, 286
HhaI	GCGC	3 cut(s)	264, 285, 360
Hin1II	CATG	6 cut(s)	43, 120, 222, 297, 392, 456
Hin6I	GCGC	3 cut(s)	262, 283, 358
HinP1I	GCGC	3 cut(s)	262, 283, 358
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188III	TCNNGA	4 cut(s)	61, 98, 110, 536
Hpy8I	GTNNAC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	409, 439
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	8 cut(s)	104, 116, 218, 293, 388, 508, 588, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 86, 650
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	6 cut(s)	43, 120, 222, 297, 392, 456
HspAI	GCGC	3 cut(s)	262, 283, 358
Kzo9I	GATC	4 cut(s)	530, 570, 631, 674
LmnI	GCTCC	5 cut(s)	259, 280, 310, 582, 658
Lsp1109I	GCAGC	4 cut(s)	64, 107, 530, 620
LweI	GCATC	5 cut(s)	64, 91, 103, 163, 375
MaeI	CTAG	4 cut(s)	86, 138, 270, 344
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	5 cut(s)	140, 184, 251, 302, 339
MalI	GATC	4 cut(s)	532, 572, 633, 676
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	4 cut(s)	530, 570, 631, 674
MboII	GAAGA	2 cut(s)	551, 684
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	530
MluCI	AATT	4 cut(s)	105, 231, 543, 648
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	3 cut(s)	219, 378, 667
Mph1103I	ATGCAT	2 cut(s)	118, 390
MseI	TTAA	4 cut(s)	248, 321, 378, 662
MslI	CAYNNNNRTG	2 cut(s)	393, 627
MspR9I	CCNGG	1 cut(s)	613
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	45, 86, 650
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	530, 570, 631, 674
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	6 cut(s)	43, 120, 222, 297, 392, 456
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	3 cut(s)	140, 184, 251
NsiI	ATGCAT	2 cut(s)	118, 390
NspI	RCATGY	2 cut(s)	120, 392
NspV	TTCGAA	1 cut(s)	603
PaeI	GCATGC	2 cut(s)	120, 392
PkrI	GCNGC	5 cut(s)	79, 122, 315, 520, 610
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Ppu21I	YACGTR	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	2 cut(s)	177, 193
RsaNI	GTAC	2 cut(s)	176, 192
RseI	CAYNNNNRTG	2 cut(s)	393, 627
SaqAI	TTAA	4 cut(s)	248, 321, 378, 662
SatI	GCNGC	5 cut(s)	78, 121, 314, 519, 609
Sau3AI	GATC	4 cut(s)	530, 570, 631, 674
ScaI	AGTACT	1 cut(s)	177
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	613
SetI	ASST	7 cut(s)	50, 87, 91, 309, 349, 450, 485
SfaNI	GCATC	5 cut(s)	64, 91, 103, 163, 375
SfcI	CTRYAG	1 cut(s)	596
SfuI	TTCGAA	1 cut(s)	603
SmiMI	CAYNNNNRTG	2 cut(s)	393, 627
SphI	GCATGC	2 cut(s)	120, 392
Sse9I	AATT	4 cut(s)	105, 231, 543, 648
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	4 cut(s)	86, 138, 270, 344
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	409, 439
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	603
TasI	AATT	4 cut(s)	105, 231, 543, 648
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	248, 321, 378, 662
Tru9I	TTAA	4 cut(s)	248, 321, 378, 662
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	3 cut(s)	140, 184, 251
TseI	GCWGC	4 cut(s)	77, 120, 518, 608
Tsp45I	GTSAC	3 cut(s)	140, 184, 251
TspDTI	ATGAA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	528
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	2 cut(s)	120, 392
XmaJI	CCTAGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	4 cut(s)	86, 138, 270, 344
ZrmI	AGTACT	1 cut(s)	177
Zsp2I	ATGCAT	2 cut(s)	118, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.