Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

18521361 .. 18525254

Gene Structure 3894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTCGAAATCGTCCTCAGACCTCTACGAGCTTCTCCTTCAGTTATCGGAGCCGATCTCCGAAGCCCTGAGCAAAGCGCCGTCACAGAGCACCGCCGTCCCCGTTAAATCGCTACTGGAGCCGCTCCTTCCTCGGAAACCTAACCCTAACTTTGACGGAGCTAACCTCCGCGCCTCAATCCGAGACTTCACTCTCGCCTGTGCTTTACTCTCGGCCTCTCAATCCTCAGCCCACGAGCTTCTCACGTGGATCCCCAAGCACCTCGCGGCAGCAGCGGACTCGGCGTTTCTGGAATTCTCGAGAGCCTATTCCGATTACGGCGGGAAATCTGGTGATGGTTTGGTGGCGGAGTTGATGGCGGAGGTGATGCCGGTGCTGAAGGAGAGGATCAAGGAGAGCTCGATTGATAAGTCGGCGGACGGGGATGAGGTCTCGGCAGCGTCGGCGAGGGTTCCGGTTGGGTTTGCCGTTGTGGCTGCTTATCAGTTTAGGTGGTTTGTTACTCAGATTGATTATTCGCATTCGGCGAAGTTGTGTGCTTTGGCTGTCCCTTGCGGTTTGACGGCTCTGGATCATTGGTCGCCGGAGGTTAAAGGGCAAGGCATGATAAGCTTTATACATATCGCGAAAAGTGTAGATGCTGCTCATCTAGCTTGGTGTCAAGATGCAATTCTTGATGCATGCCGCCAGAATATTGCTTCTAGTGACAAGATATGGCATCTTGTGGTGGAGATGTCAGTACTTGTGGTGACTCGTACGCAGCAGAGTGATCCTCGTAGTGCATGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACCTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGCTATGTAGAGCCACTTTTTATTGGTGTGGGTTTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATACATGCTGATGATGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAGACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTAGATGAACTTGCTACTTTGCACAAAGAAGCAGCACTGAAAAGGTCTCGTGAAGAAATTAGAAATCTTGTCAGTCGTATACTGATCCTGCTCCATCAATGCAAAGGTCTGCAATTTGAAGAAGCCTGGGGCAAGCATAGAAATGATCCGAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTTTTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

46.97

Weight (kDa)

6.9

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AccBSI	CCGCTC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	1129
AccII	CGCG	3 cut(s)	171, 266, 626
AclWI	GGATC	7 cut(s)	244, 257, 395, 579, 764, 1129, 1190
AcsI	RAATTY	2 cut(s)	293, 795
AcuI	CTGAAG	2 cut(s)	23, 398
AcvI	CACGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	741, 757
AgsI	TTSAA	1 cut(s)	1169
AjnI	CCWGG	2 cut(s)	819, 1175
AluBI	AGCT	8 cut(s)	31, 161, 238, 399, 612, 653, 911, 1012
AluI	AGCT	8 cut(s)	31, 161, 238, 399, 612, 653, 911, 1012
Alw21I	GWGCWC	2 cut(s)	92, 401
Alw26I	GTCTC	5 cut(s)	177, 436, 962, 992, 1101
AlwI	GGATC	7 cut(s)	244, 257, 395, 579, 764, 1129, 1190
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	7 cut(s)	269, 272, 437, 476, 641, 760, 1082
ApoI	RAATTY	2 cut(s)	293, 795
AspA2I	CCTAGG	1 cut(s)	833
AspLEI	GCGC	5 cut(s)	79, 173, 828, 849, 924
AsuHPI	GGTGA	4 cut(s)	344, 376, 760, 809
AvaI	CYCGRG	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	401
BauI	CACGAG	2 cut(s)	233, 1098
BbrPI	CACGTG	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	92, 401
BbvCI	CCTCAGC	1 cut(s)	226
BbvI	GCAGC	7 cut(s)	281, 284, 449, 463, 628, 772, 1094
BccI	CCATC	3 cut(s)	329, 349, 1152
BceAI	ACGGC	6 cut(s)	64, 80, 334, 452, 579, 834
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BciT130I	CCWGG	2 cut(s)	821, 1177
BciVI	GTATCC	1 cut(s)	942
BcoDI	GTCTC	5 cut(s)	177, 436, 962, 992, 1101
BfaI	CTAG	4 cut(s)	650, 702, 834, 908
BfoI	RGCGCY	3 cut(s)	80, 829, 850
BfuI	GTATCC	1 cut(s)	942
BglI	GCCNNNNNGGC	1 cut(s)	473
BlnI	CCTAGG	1 cut(s)	833
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	2 cut(s)	821, 1177
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	4 cut(s)	51, 120, 251, 453
BmrFI	CCNGG	2 cut(s)	821, 1177
BmsI	GCATC	5 cut(s)	357, 628, 655, 667, 727
BplI	GAGNNNNNCTC	6 cut(s)	41, 73, 150, 182, 757, 789
BpmI	CTGGAG	2 cut(s)	137, 842
Bpu10I	CCTNAGC	2 cut(s)	68, 226
BsaAI	YACGTR	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	436, 1101
BsaJI	CCNNGG	3 cut(s)	131, 833, 1176
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	1201, 1231
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	120, 984, 1255
BseBI	CCWGG	2 cut(s)	821, 1177
BseDI	CCNNGG	3 cut(s)	131, 833, 1176
BseGI	GGATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	30, 59, 240, 518
BseNI	ACTGG	3 cut(s)	120, 984, 1255
BseXI	GCAGC	7 cut(s)	281, 284, 449, 463, 628, 772, 1094
Bsh1236I	CGCG	3 cut(s)	171, 266, 626
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	92, 401
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	371, 455, 584
BsiWI	CGTACG	1 cut(s)	755
BslFI	GGGAC	2 cut(s)	83, 533
BsmAI	GTCTC	5 cut(s)	177, 436, 962, 992, 1101
BsmFI	GGGAC	2 cut(s)	83, 533
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	2 cut(s)	436, 1101
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	92, 401
Bsp143I	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
Bsp68I	TCGCGA	1 cut(s)	626
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	4 cut(s)	29, 60, 239, 517
BspFNI	CGCG	3 cut(s)	171, 266, 626
BspLI	GGNNCC	4 cut(s)	51, 120, 251, 453
BspPI	GGATC	7 cut(s)	244, 257, 395, 579, 764, 1129, 1190
BspTNI	GGTCTC	2 cut(s)	436, 1101
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	120, 984, 1255
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	131, 833, 1176
BssMI	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
BssNAI	GTATAC	1 cut(s)	1130
BssSI	CACGAG	2 cut(s)	233, 1098
BssT1I	CCWWGG	1 cut(s)	833
Bst1107I	GTATAC	1 cut(s)	1130
Bst2BI	CACGAG	2 cut(s)	233, 1098
Bst2UI	CCWGG	2 cut(s)	821, 1177
Bst4CI	ACNGT	2 cut(s)	973, 1003
BstAPI	GCANNNNNTGC	1 cut(s)	1214
BstBAI	YACGTR	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	682, 830, 1184
BstDEI	CTNAG	4 cut(s)	16, 68, 226, 504
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	3 cut(s)	171, 266, 626
BstH2I	RGCGCY	3 cut(s)	80, 829, 850
BstHHI	GCGC	5 cut(s)	79, 173, 828, 849, 924
BstKTI	GATC	8 cut(s)	57, 252, 390, 574, 772, 1137, 1198, 1241
BstMAI	GTCTC	5 cut(s)	177, 436, 962, 992, 1101
BstMBI	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 272, 281, 443, 473, 609, 650, 1214
BstNI	CCWGG	2 cut(s)	821, 1177
BstNSI	RCATGY	2 cut(s)	684, 956
BstSCI	CCNGG	2 cut(s)	819, 1175
BstUI	CGCG	3 cut(s)	171, 266, 626
BstV1I	GCAGC	7 cut(s)	281, 284, 449, 463, 628, 772, 1094
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	1130
BsuI	GTATCC	1 cut(s)	942
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	1085
BtuMI	TCGCGA	1 cut(s)	626
Cac8I	GCNNGC	3 cut(s)	682, 830, 1184
CfoI	GCGC	5 cut(s)	79, 173, 828, 849, 924
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	740, 756
CviAII	CATG	6 cut(s)	604, 681, 783, 858, 953, 1017
CviQI	GTAC	2 cut(s)	740, 756
DdeI	CTNAG	4 cut(s)	16, 68, 226, 504
DpnI	GATC	8 cut(s)	56, 251, 389, 573, 771, 1136, 1197, 1240
DpnII	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
EciI	GGCGGA	3 cut(s)	362, 374, 431
Ecl136II	GAGCTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	833
Eco24I	GRGCYC	1 cut(s)	401
Eco31I	GGTCTC	2 cut(s)	436, 1101
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	23, 398
Eco72I	CACGTG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	819, 1175
EcoT14I	CCWWGG	1 cut(s)	833
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	833
FaeI	CATG	6 cut(s)	607, 684, 786, 861, 956, 1020
FaqI	GGGAC	2 cut(s)	83, 533
FatI	CATG	6 cut(s)	603, 680, 782, 857, 952, 1016
FauI	CCCGC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1129
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	401
FspBI	CTAG	4 cut(s)	650, 702, 834, 908
GlaI	GCGC	5 cut(s)	78, 172, 827, 848, 923
GsuI	CTGGAG	2 cut(s)	137, 842
HaeII	RGCGCY	3 cut(s)	80, 829, 850
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	3 cut(s)	371, 455, 584
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	5 cut(s)	79, 173, 828, 849, 924
Hin1II	CATG	6 cut(s)	607, 684, 786, 861, 956, 1020
Hin6I	GCGC	5 cut(s)	77, 171, 826, 847, 922
HinP1I	GCGC	5 cut(s)	77, 171, 826, 847, 922
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	2 cut(s)	278, 751
HpaII	CCGG	3 cut(s)	371, 455, 584
HphI	GGTGA	4 cut(s)	344, 376, 760, 809
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	8 cut(s)	19, 49, 61, 135, 182, 313, 507, 1200
Hpy188III	TCNNGA	8 cut(s)	290, 298, 300, 569, 625, 662, 674, 1100
Hpy8I	GTNNAC	1 cut(s)	1130
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	47, 137, 373
HpyCH4III	ACNGT	2 cut(s)	973, 1003
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	7 cut(s)	668, 680, 782, 857, 1072, 1152, 1162
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 272, 281, 443, 473, 609, 650, 1214
HpyF3I	CTNAG	4 cut(s)	16, 68, 226, 504
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	6 cut(s)	607, 684, 786, 861, 956, 1020
HspAI	GCGC	5 cut(s)	77, 171, 826, 847, 922
Kzo9I	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
LmnI	GCTCC	8 cut(s)	49, 118, 129, 158, 823, 844, 1146, 1222
Lsp1109I	GCAGC	7 cut(s)	281, 284, 449, 463, 628, 772, 1094
LweI	GCATC	5 cut(s)	357, 628, 655, 667, 727
MaeI	CTAG	4 cut(s)	650, 702, 834, 908
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	6 cut(s)	81, 499, 704, 748, 815, 903
MalI	GATC	8 cut(s)	56, 251, 389, 573, 771, 1136, 1197, 1240
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
MboII	GAAGA	3 cut(s)	1115, 1181, 1248
MfeI	CAATTG	1 cut(s)	1212
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	92, 401
MluCI	AATT	6 cut(s)	293, 669, 795, 1107, 1163, 1212
MlyI	GAGTC	2 cut(s)	272, 745
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	5 cut(s)	105, 591, 812, 942, 1226
MslI	CAYNNNNRTG	2 cut(s)	957, 1191
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	371, 455, 584
MspR9I	CCNGG	2 cut(s)	821, 1177
MunI	CAATTG	1 cut(s)	1212
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	2 cut(s)	821, 1177
MvnI	CGCG	3 cut(s)	171, 266, 626
MwoI	GCNNNNNNNGC	8 cut(s)	118, 272, 281, 443, 473, 609, 650, 1214
NdeI	CATATG	1 cut(s)	1036
NdeII	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
NlaIII	CATG	6 cut(s)	607, 684, 786, 861, 956, 1020
NlaIV	GGNNCC	4 cut(s)	51, 120, 251, 453
NmeAIII	GCCGAG	3 cut(s)	191, 260, 413
NmuCI	GTSAC	4 cut(s)	81, 704, 748, 815
NruI	TCGCGA	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	2 cut(s)	684, 956
PaeI	GCATGC	1 cut(s)	684
PaeR7I	CTCGAG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PctI	GAATGC	1 cut(s)	520
Pfl23II	CGTACG	1 cut(s)	755
PleI	GAGTC	2 cut(s)	272, 745
PmaCI	CACGTG	1 cut(s)	246
PmlI	CACGTG	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	272, 745
Ppu21I	YACGTR	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	1007
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	819, 1175
PspCI	CACGTG	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	819, 1175
PspLI	CGTACG	1 cut(s)	755
PspN4I	GGNNCC	4 cut(s)	51, 120, 251, 453
PsuI	RGATCY	1 cut(s)	249
RruI	TCGCGA	1 cut(s)	626
RsaI	GTAC	2 cut(s)	741, 757
RsaNI	GTAC	2 cut(s)	740, 756
RseI	CAYNNNNRTG	2 cut(s)	957, 1191
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	5 cut(s)	105, 591, 812, 942, 1226
Sau3AI	GATC	8 cut(s)	54, 249, 387, 571, 769, 1134, 1195, 1238
ScaI	AGTACT	1 cut(s)	741
SchI	GAGTC	2 cut(s)	272, 745
ScrFI	CCNGG	2 cut(s)	821, 1177
SduI	GDGCHC	2 cut(s)	92, 401
SfaNI	GCATC	5 cut(s)	357, 628, 655, 667, 727
Sfr274I	CTCGAG	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	957, 1191
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SphI	GCATGC	1 cut(s)	684
Sse9I	AATT	6 cut(s)	293, 669, 795, 1107, 1163, 1212
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	4 cut(s)	650, 702, 834, 908
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	819, 1175
StyI	CCWWGG	1 cut(s)	833
TaaI	ACNGT	2 cut(s)	973, 1003
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	3 cut(s)	5, 299, 401
TasI	AATT	6 cut(s)	293, 669, 795, 1107, 1163, 1212
TatI	WGTACW	1 cut(s)	739
TauI	GCSGC	3 cut(s)	124, 269, 687
Tru1I	TTAA	5 cut(s)	105, 591, 812, 942, 1226
Tru9I	TTAA	5 cut(s)	105, 591, 812, 942, 1226
TscAI	CASTG	1 cut(s)	1092
TseFI	GTSAC	4 cut(s)	81, 704, 748, 815
TseI	GCWGC	7 cut(s)	269, 272, 437, 476, 641, 760, 1082
Tsp45I	GTSAC	4 cut(s)	81, 704, 748, 815
TspDTI	ATGAA	1 cut(s)	1071
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	1092
XapI	RAATTY	2 cut(s)	293, 795
XceI	RCATGY	2 cut(s)	684, 956
XhoI	CTCGAG	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	1129
XspI	CTAG	4 cut(s)	650, 702, 834, 908
ZrmI	AGTACT	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.