Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

22102628 .. 22103448

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTATGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTTAGGCACATTTTCCCTTTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTAGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCAAAATCTTGTTATTCGTATACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTTCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTAAGAATTAACCTTATTGCTGCTTTTATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.66

Weight (kDa)

9.72

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	191, 305
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	104, 149, 205
AluI	AGCT	3 cut(s)	104, 149, 205
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	275, 365, 461
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	21, 42
AsuII	TTCGAA	1 cut(s)	360
AvrII	CCTAGG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	287, 377, 448
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	27, 101
BfmI	CTRYAG	1 cut(s)	353
BfoI	RGCGCY	2 cut(s)	22, 43
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	4 cut(s)	71, 276, 366, 462
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	4 cut(s)	72, 277, 367, 463
Bme1390I	CCNGG	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu14I	TTCGAA	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	26, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	26, 369
BseGI	GGATG	3 cut(s)	147, 253, 391
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	287, 377, 448
BsmAI	GTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	287, 327, 388, 431
BspACI	CCGC	1 cut(s)	71
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	26, 369
BssMI	GATC	4 cut(s)	287, 327, 388, 431
BssNAI	GTATAC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	166, 196
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	23, 147, 377
BstF5I	GGATG	3 cut(s)	147, 253, 391
BstH2I	RGCGCY	2 cut(s)	22, 43
BstHHI	GCGC	2 cut(s)	21, 42
BstKTI	GATC	4 cut(s)	290, 330, 391, 434
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	287, 327, 388, 431
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	287, 377, 448
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BstZ17I	GTATAC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	147, 253, 391
Cac8I	GCNNGC	3 cut(s)	23, 147, 377
CfoI	GCGC	2 cut(s)	21, 42
CviAII	CATG	2 cut(s)	51, 210
CviJI	RGCY	7 cut(s)	25, 55, 70, 104, 149, 205, 368
CviKI_1	RGCY	7 cut(s)	25, 55, 70, 104, 149, 205, 368
DpnI	GATC	4 cut(s)	289, 329, 390, 433
DpnII	GATC	4 cut(s)	287, 327, 388, 431
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	2 cut(s)	54, 213
FaiI	YATR	9 cut(s)	52, 63, 200, 211, 229, 231, 323, 473, 475
FatI	CATG	2 cut(s)	50, 209
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	71, 276, 366, 462
FokI	GGATG	3 cut(s)	154, 260, 398
Fsp4HI	GCNGC	4 cut(s)	71, 276, 366, 462
FspBI	CTAG	2 cut(s)	27, 101
GlaI	GCGC	2 cut(s)	20, 41
GluI	GCNGC	4 cut(s)	71, 276, 366, 462
HaeII	RGCGCY	2 cut(s)	22, 43
HhaI	GCGC	2 cut(s)	21, 42
Hin1II	CATG	2 cut(s)	54, 213
Hin6I	GCGC	2 cut(s)	19, 40
HinP1I	GCGC	2 cut(s)	19, 40
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	166, 196
HpyCH4V	TGCA	5 cut(s)	50, 145, 265, 345, 355
Hsp92II	CATG	2 cut(s)	54, 213
HspAI	GCGC	2 cut(s)	19, 40
Kzo9I	GATC	4 cut(s)	287, 327, 388, 431
LmnI	GCTCC	3 cut(s)	16, 37, 339
LpnPI	CCDG	6 cut(s)	35, 77, 158, 355, 367, 382
Lsp1109I	GCAGC	3 cut(s)	287, 377, 448
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	27, 101
MaeIII	GTNAC	2 cut(s)	8, 96
MalI	GATC	4 cut(s)	289, 329, 390, 433
MboI	GATC	4 cut(s)	287, 327, 388, 431
MboII	GAAGA	3 cut(s)	297, 308, 441
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	300, 405, 447
MnlI	CCTC	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	5 cut(s)	5, 78, 135, 419, 450
MslI	CAYNNNNRTG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	287, 327, 388, 431
NlaIII	CATG	2 cut(s)	54, 213
NmuCI	GTSAC	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	300
PkrI	GCNGC	4 cut(s)	72, 277, 367, 463
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	5, 78, 135, 419, 450
SatI	GCNGC	4 cut(s)	71, 276, 366, 462
Sau3AI	GATC	4 cut(s)	287, 327, 388, 431
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	5 cut(s)	106, 151, 207, 242, 456
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	300, 405, 447
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	27, 101
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	166, 196
TaqI	TCGA	1 cut(s)	360
TasI	AATT	3 cut(s)	300, 405, 447
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	5, 78, 135, 419, 450
Tru9I	TTAA	5 cut(s)	5, 78, 135, 419, 450
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	275, 365, 461
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	300
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	27, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.