Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004775.1

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

17245 .. 22443

Gene Structure 5199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004775.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgagggctttgagctggggtccgattatggcagtcagggctttgagcccagaaaggtcgttacgagagctcgattattcaccggtttcagtggagctcgcgcccttctgcagcgaagcccagtttgattggctcatcgctgaggctcaacagctccagcagttgttcgtcatcatttgtgcactattcaacacgtcggtcaaccccggcgggaaaccccaggccagttcccaggccccaccaacccaaactacagcggaggctcagccgagcggcagctgccctcctgtgcaggacctcgccgctatgtatgagctagcactggcggactttcacagggaaaatcgagagcgcgagcaggagcgtagagaaaaggccgaggcacaaaaacaggtggccacgctgatgtcaagatttgatgagctgaagaaggcgctggaagcaagcgcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

5.11

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AccII	CGCG	2 cut(s)	101, 354
AciI	CCGC	5 cut(s)	210, 257, 273, 303, 326
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	195
AjnI	CCWGG	2 cut(s)	219, 231
AluBI	AGCT	7 cut(s)	15, 70, 97, 154, 279, 316, 424
AluI	AGCT	7 cut(s)	15, 70, 97, 154, 279, 316, 424
Alw21I	GWGCWC	3 cut(s)	72, 99, 184
Alw44I	GTGCAC	1 cut(s)	180
AoxI	GGCC	4 cut(s)	222, 234, 375, 396
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	111, 276, 279
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	4 cut(s)	103, 354, 436, 449
AspS9I	GGNCC	3 cut(s)	20, 235, 295
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	72
AsuNHI	GCTAGC	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	20, 295
BaeGI	GKGCMC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	3 cut(s)	50, 72, 99
Bbv12I	GWGCWC	3 cut(s)	72, 99, 184
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	123, 266, 288
BciT130I	CCWGG	2 cut(s)	221, 233
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	109, 252
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	5 cut(s)	112, 274, 277, 280, 303
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	5 cut(s)	113, 275, 278, 281, 304
Bme1390I	CCNGG	3 cut(s)	207, 221, 233
Bme18I	GGWCC	2 cut(s)	20, 295
BmgBI	CACGTC	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	20, 235, 295
BmiI	GGNNCC	2 cut(s)	21, 237
BmrFI	CCNGG	3 cut(s)	207, 221, 233
BmrI	ACTGGG	1 cut(s)	115
BmtI	GCTAGC	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	205, 219, 231, 378
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	121, 225, 327
BseBI	CCWGG	2 cut(s)	221, 233
BseDI	CCNNGG	4 cut(s)	205, 219, 231, 378
BseMII	CTCAG	2 cut(s)	132, 278
BseNI	ACTGG	3 cut(s)	121, 225, 327
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	123, 266, 288
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	101, 354
BshFI	GGCC	4 cut(s)	224, 236, 377, 398
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	3 cut(s)	72, 99, 184
BsiSI	CCGG	2 cut(s)	83, 207
BsnI	GGCC	4 cut(s)	224, 236, 377, 398
Bsp1286I	GDGCHC	4 cut(s)	50, 72, 99, 184
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	210, 257, 273, 303, 326
BspANI	GGCC	4 cut(s)	224, 236, 377, 398
BspCNI	CTCAG	2 cut(s)	133, 277
BspFNI	CGCG	2 cut(s)	101, 354
BspLI	GGNNCC	2 cut(s)	21, 237
BspMAI	CTGCAG	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	121, 225, 327
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	4 cut(s)	205, 219, 231, 378
Bst2UI	CCWGG	2 cut(s)	221, 233
BstC8I	GCNNGC	4 cut(s)	99, 318, 356, 445
BstDEI	CTNAG	2 cut(s)	141, 264
BstFNI	CGCG	2 cut(s)	101, 354
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	4 cut(s)	103, 354, 436, 449
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 279, 440
BstNI	CCWGG	2 cut(s)	221, 233
BstSCI	CCNGG	3 cut(s)	205, 219, 231
BstSFI	CTRYAG	2 cut(s)	109, 252
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	2 cut(s)	101, 354
BstV1I	GCAGC	3 cut(s)	123, 266, 288
BsuRI	GGCC	4 cut(s)	224, 236, 377, 398
BtgZI	GCGATG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	96, 320
Cac8I	GCNNGC	4 cut(s)	99, 318, 356, 445
CfoI	GCGC	4 cut(s)	103, 354, 436, 449
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	3 cut(s)	20, 235, 295
CspAI	ACCGGT	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	141, 264
EaeI	YGGCCR	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	341
Ecl136II	GAGCTC	2 cut(s)	70, 97
Eco24I	GRGCYC	3 cut(s)	50, 72, 99
Eco47I	GGWCC	2 cut(s)	20, 295
Eco53kI	GAGCTC	2 cut(s)	70, 97
Eco57I	CTGAAG	1 cut(s)	446
EcoICRI	GAGCTC	2 cut(s)	70, 97
EcoO109I	RGGNCCY	2 cut(s)	235, 295
EcoRII	CCWGG	2 cut(s)	219, 231
EcoT38I	GRGCYC	3 cut(s)	50, 72, 99
FaiI	YATR	3 cut(s)	29, 308, 312
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	5 cut(s)	112, 274, 277, 280, 303
FriOI	GRGCYC	3 cut(s)	50, 72, 99
Fsp4HI	GCNGC	5 cut(s)	112, 274, 277, 280, 303
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	4 cut(s)	102, 353, 435, 448
GluI	GCNGC	5 cut(s)	112, 274, 277, 280, 303
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	4 cut(s)	224, 236, 377, 398
HapII	CCGG	2 cut(s)	83, 207
HhaI	GCGC	4 cut(s)	103, 354, 436, 449
Hin6I	GCGC	4 cut(s)	101, 352, 434, 447
HinP1I	GCGC	4 cut(s)	101, 352, 434, 447
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	83, 207
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	182, 202
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	347, 411
Hpy8I	GTNNAC	2 cut(s)	182, 202
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	115, 424
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	111, 182, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 279, 440
HpyF3I	CTNAG	2 cut(s)	141, 264
HpySE526I	ACGT	1 cut(s)	194
HspAI	GCGC	4 cut(s)	101, 352, 434, 447
LmnI	GCTCC	3 cut(s)	94, 159, 361
Lsp1109I	GCAGC	3 cut(s)	123, 266, 288
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	273
MboII	GAAGA	1 cut(s)	439
MhlI	GDGCHC	4 cut(s)	50, 72, 99, 184
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	5 cut(s)	136, 253, 294, 308, 373
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	257, 279
MspI	CCGG	2 cut(s)	83, 207
MspR9I	CCNGG	3 cut(s)	207, 221, 233
MvaI	CCWGG	2 cut(s)	221, 233
MvnI	CGCG	2 cut(s)	101, 354
MwoI	GCNNNNNNNGC	3 cut(s)	38, 279, 440
NciI	CCSGG	1 cut(s)	207
NheI	GCTAGC	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	21, 237
NmeAIII	GCCGAG	2 cut(s)	294, 403
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	5 cut(s)	113, 275, 278, 281, 304
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	2 cut(s)	72, 99
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	219, 231
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	219, 231
PspN4I	GGNNCC	2 cut(s)	21, 237
PspPI	GGNCC	3 cut(s)	20, 235, 295
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	2 cut(s)	72, 99
SatI	GCNGC	5 cut(s)	112, 274, 277, 280, 303
Sau96I	GGNCC	3 cut(s)	20, 235, 295
ScrFI	CCNGG	3 cut(s)	207, 221, 233
SduI	GDGCHC	4 cut(s)	50, 72, 99, 184
SfcI	CTRYAG	2 cut(s)	109, 252
SinI	GGWCC	2 cut(s)	20, 295
SmiMI	CAYNNNNRTG	1 cut(s)	404
SsiI	CCGC	5 cut(s)	210, 257, 273, 303, 326
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	2 cut(s)	72, 99
StyD4I	CCNGG	3 cut(s)	205, 219, 231
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	72, 346
TaqII	GACCGA	1 cut(s)	187
TauI	GCSGC	2 cut(s)	276, 305
TscAI	CASTG	2 cut(s)	96, 327
TseI	GCWGC	3 cut(s)	111, 276, 279
TspRI	CASTG	2 cut(s)	96, 327
VneI	GTGCAC	1 cut(s)	180
VpaK11BI	GGWCC	2 cut(s)	20, 295
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.