Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008053.1

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

121770 .. 122534

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008053.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgttaagtcacttggagcgccagcctaggaacaagaagcaccgtgttgcatggcttcgttacgtagagccgctttttaatggtgttggtttggtgttactaactcatttcaggcgcattttccctcttttctttaagtggatgcaagctgatgatgatgagactgttttactggtattatttaattcatcgcctcgcttcatgaggttggtggatgaacttgctactttgcacaaagaagcagcattgagaagatctcgtgaagaaattcgaaatcttgttattcctatactgatcttgctccatcattcgcagcagcctggggcaaccacagggatgatccaaacttggcaacaattgctccctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.56

Weight (kDa)

10.44

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	242, 313, 316
ApoI	RAATTY	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	267
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	21, 117
AsuII	TTCGAA	1 cut(s)	271
AvrII	CCTAGG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	254, 325, 328
BccI	CCATC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	22
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	4 cut(s)	71, 243, 314, 317
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	4 cut(s)	72, 244, 315, 318
Bme1390I	CCNGG	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
Bpu14I	TTCGAA	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	26, 320
BsaXI	ACNNNNNCTCC	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	26, 320
BseGI	GGATG	3 cut(s)	147, 220, 342
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	254, 325, 328
BsmAI	GTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	254, 294, 339
BspACI	CCGC	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	26, 320
BssMI	GATC	3 cut(s)	254, 294, 339
BssSI	CACGAG	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	44, 166
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	23, 147
BstF5I	GGATG	3 cut(s)	147, 220, 342
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	21, 117
BstKTI	GATC	3 cut(s)	257, 297, 342
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	254, 294, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSNI	TACGTA	1 cut(s)	64
BstV1I	GCAGC	3 cut(s)	254, 325, 328
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	147, 220, 342
Cac8I	GCNNGC	2 cut(s)	23, 147
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	2 cut(s)	21, 117
CviAII	CATG	2 cut(s)	51, 202
CviJI	RGCY	5 cut(s)	25, 55, 70, 149, 319
CviKI_1	RGCY	5 cut(s)	25, 55, 70, 149, 319
DpnI	GATC	3 cut(s)	256, 296, 341
DpnII	GATC	3 cut(s)	254, 294, 339
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	2 cut(s)	54, 205
FaiI	YATR	3 cut(s)	52, 203, 290
FatI	CATG	2 cut(s)	50, 201
Fnu4HI	GCNGC	4 cut(s)	71, 243, 314, 317
FokI	GGATG	3 cut(s)	154, 227, 349
Fsp4HI	GCNGC	4 cut(s)	71, 243, 314, 317
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	20, 116
GluI	GCNGC	4 cut(s)	71, 243, 314, 317
HaeII	RGCGCY	1 cut(s)	22
HhaI	GCGC	2 cut(s)	21, 117
Hin1II	CATG	2 cut(s)	54, 205
Hin6I	GCGC	2 cut(s)	19, 115
HinP1I	GCGC	2 cut(s)	19, 115
Hpy188III	TCNNGA	2 cut(s)	202, 260
HpyCH4III	ACNGT	2 cut(s)	44, 166
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	50, 145, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	54, 205
HspAI	GCGC	2 cut(s)	19, 115
Kzo9I	GATC	3 cut(s)	254, 294, 339
LmnI	GCTCC	3 cut(s)	16, 306, 366
LpnPI	CCDG	6 cut(s)	35, 97, 158, 306, 318, 333
Lsp1109I	GCAGC	3 cut(s)	254, 325, 328
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	8, 59, 96
MalI	GATC	3 cut(s)	256, 296, 341
MboI	GATC	3 cut(s)	254, 294, 339
MboII	GAAGA	2 cut(s)	264, 275
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	1 cut(s)	254
MluCI	AATT	3 cut(s)	184, 267, 356
MnlI	CCTC	3 cut(s)	135, 198, 204
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	5 cut(s)	5, 78, 135, 183, 370
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	254, 294, 339
NlaIII	CATG	2 cut(s)	54, 205
NmuCI	GTSAC	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	271
PagI	TCATGA	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	72, 244, 315, 318
Ppu21I	YACGTR	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	5, 78, 135, 183, 370
SatI	GCNGC	4 cut(s)	71, 243, 314, 317
Sau3AI	GATC	3 cut(s)	254, 294, 339
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	3 cut(s)	66, 151, 209
SfaNI	GCATC	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	335
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	3 cut(s)	184, 267, 356
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	44, 166
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	271
TasI	AATT	3 cut(s)	184, 267, 356
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	5, 78, 135, 183, 370
Tru9I	TTAA	5 cut(s)	5, 78, 135, 183, 370
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	3 cut(s)	242, 313, 316
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	177, 190, 231
XapI	RAATTY	1 cut(s)	267
XmaJI	CCTAGG	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.