Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

20628580 .. 20631824

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001778

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCTCCCACTGTCTTCTTCTCTCCGCGAAACACAAGTCTCTATTACCTCTTCGTCCACAGCCAATCTTCGCATTTGACTCAAAAGCTAATTCAACTTCCAACCGAAGCACCCAGCTCCTTTCCTGAGCGTCCAGTGGATTTCACCTTCTCTCCACTGAAACCTGCATCCCTCGGATCCCTAATCATCAAACTCTCAACTCCCGCCCCCTACAATTTCTTCAATCATCGAAACCCTAACTCGCTCTCTCTAACTCATTCACAACCCCCTCCCCACCTCTCTGGCCTCGTCTTCGCCTCTGTTCACTCCGACTCAGTGAGTGAGCTTCTCAGAGATCGATTCAAACTCTCCACTATCTCTATCGCTGAAGCCGAAGTGAAGAGAAGCAGCTTCTTGGGCTATGAAGCCTCGAGTGGACATTTTGCAATTCACGATGAGCATAGGAGGTTTGATAAAATTCTAAATGAGATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTAGTGCCGCTTTTTAATGGTGTTGGTCTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCGAAATCTTGTTATTCGTATACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTTGAAGCAGCCTGGGGCAAGCACAAGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGTGTTCTATTAATGCTCTTTGGTGCTTGGACGAGCTGAGCTTTTGCAAAGGAGGTTCCGAACCCATTTTTGATAGGATGATGTTTCGCATGTATTGGGGATCTGGGGCTGGGGTGGAATTGGAAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.47

Weight (kDa)

9.26

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	709
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	26, 204, 539
AclWI	GGATC	4 cut(s)	171, 184, 770, 934
AcsI	RAATTY	2 cut(s)	456, 687
AcuI	CTGAAG	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	95, 223, 343, 578, 749
AjnI	CCWGG	1 cut(s)	755
AluBI	AGCT	7 cut(s)	88, 117, 325, 390, 592, 862, 867
AluI	AGCT	7 cut(s)	88, 117, 325, 390, 592, 862, 867
Alw26I	GTCTC	2 cut(s)	9, 44
AlwI	GGATC	4 cut(s)	171, 184, 770, 934
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	387, 662, 752
ApoI	RAATTY	2 cut(s)	456, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AseI	ATTAAT	1 cut(s)	837
Asp700I	GAANNNNTTC	1 cut(s)	687
AspA2I	CCTAGG	1 cut(s)	494
AspLEI	GCGC	2 cut(s)	489, 510
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	409
AvrII	CCTAGG	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	7, 283
BbvI	GCAGC	3 cut(s)	399, 674, 764
BccI	CCATC	1 cut(s)	732
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	1 cut(s)	757
BcoDI	GTCTC	2 cut(s)	9, 44
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	740
BfoI	RGCGCY	2 cut(s)	490, 511
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	4 cut(s)	388, 539, 663, 753
BlnI	CCTAGG	1 cut(s)	494
BlpI	GCTNAGC	1 cut(s)	863
BlsI	GCNGC	4 cut(s)	389, 540, 664, 754
Bme1390I	CCNGG	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	178, 883
BmrFI	CCNGG	1 cut(s)	757
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	2 cut(s)	7, 283
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	863
Bpu14I	TTCGAA	1 cut(s)	691
Bsa29I	ATCGAT	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	172, 494, 756
BsaXI	ACNNNNNCTCC	4 cut(s)	136, 166, 781, 811
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	757
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	3 cut(s)	172, 494, 756
BseGI	GGATG	4 cut(s)	167, 640, 778, 909
BseMII	CTCAG	4 cut(s)	117, 327, 343, 854
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	3 cut(s)	399, 674, 764
BseYI	CCCAGC	2 cut(s)	113, 935
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	9, 44
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	691
Bsp143I	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
Bsp1720I	GCTNAGC	1 cut(s)	863
BspACI	CCGC	3 cut(s)	26, 204, 539
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	4 cut(s)	118, 326, 342, 855
BspDI	ATCGAT	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	178, 883
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	4 cut(s)	171, 184, 770, 934
BspT104I	TTCGAA	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	172, 494, 756
BssMI	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
BssNAI	GTATAC	1 cut(s)	710
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	494
Bst1107I	GTATAC	1 cut(s)	710
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	757
Bst4CI	ACNGT	2 cut(s)	13, 583
Bst6I	CTCTTC	2 cut(s)	56, 374
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstBAI	YACGTR	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	491, 764
BstDEI	CTNAG	4 cut(s)	126, 313, 329, 863
BstF5I	GGATG	4 cut(s)	167, 640, 778, 909
BstFNI	CGCG	1 cut(s)	28
BstH2I	RGCGCY	2 cut(s)	490, 511
BstHHI	GCGC	2 cut(s)	489, 510
BstKTI	GATC	7 cut(s)	179, 337, 677, 717, 778, 821, 929
BstMAI	GTCTC	2 cut(s)	9, 44
BstMBI	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 794
BstNI	CCWGG	1 cut(s)	757
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	755
BstSFI	CTRYAG	1 cut(s)	740
BstSNI	TACGTA	1 cut(s)	532
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	399, 674, 764
BstV2I	GAAGAC	2 cut(s)	7, 283
BstX2I	RGATCY	3 cut(s)	176, 674, 926
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	3 cut(s)	176, 674, 926
BstZ17I	GTATAC	1 cut(s)	710
Bsu15I	ATCGAT	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	167, 640, 778, 909
BtsIMutI	CAGTG	4 cut(s)	9, 141, 155, 321
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	491, 764
CfoI	GCGC	2 cut(s)	489, 510
ClaI	ATCGAT	1 cut(s)	337
CseI	GACGC	1 cut(s)	119
CviAII	CATG	3 cut(s)	519, 597, 916
DdeI	CTNAG	4 cut(s)	126, 313, 329, 863
DpnI	GATC	7 cut(s)	178, 336, 676, 716, 777, 820, 928
DpnII	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
Eam1104I	CTCTTC	2 cut(s)	56, 374
EarI	CTCTTC	2 cut(s)	56, 374
Eco105I	TACGTA	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	3 cut(s)	522, 600, 919
FaiI	YATR	9 cut(s)	402, 441, 520, 587, 598, 616, 618, 710, 917
FatI	CATG	3 cut(s)	518, 596, 915
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	709
Fnu4HI	GCNGC	4 cut(s)	388, 539, 663, 753
FokI	GGATG	4 cut(s)	154, 647, 785, 916
Fsp4HI	GCNGC	4 cut(s)	388, 539, 663, 753
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	488, 509
GluI	GCNGC	4 cut(s)	388, 539, 663, 753
GsaI	CCCAGC	2 cut(s)	117, 939
HaeII	RGCGCY	2 cut(s)	490, 511
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	489, 510
Hin1II	CATG	3 cut(s)	522, 600, 919
Hin6I	GCGC	2 cut(s)	487, 508
HinP1I	GCGC	2 cut(s)	487, 508
HinfI	GANTC	3 cut(s)	79, 311, 339
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	4 cut(s)	58, 304, 416, 710
Hpy188I	TCNGA	4 cut(s)	176, 310, 332, 886
Hpy188III	TCNNGA	3 cut(s)	125, 431, 680
Hpy8I	GTNNAC	4 cut(s)	58, 304, 416, 710
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	13, 583
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	7 cut(s)	167, 425, 518, 652, 732, 742, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 794
HpyF3I	CTNAG	4 cut(s)	126, 313, 329, 863
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	522, 600, 919
HspAI	GCGC	2 cut(s)	487, 508
Kzo9I	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
LmnI	GCTCC	5 cut(s)	122, 484, 505, 726, 802
Lsp1109I	GCAGC	3 cut(s)	399, 674, 764
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	476, 527
MalI	GATC	7 cut(s)	178, 336, 676, 716, 777, 820, 928
MboI	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	3 cut(s)	176, 674, 926
MluCI	AATT	7 cut(s)	90, 214, 426, 456, 687, 792, 944
MlyI	GAGTC	2 cut(s)	73, 305
MmeI	TCCRAC	2 cut(s)	125, 333
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	4 cut(s)	473, 546, 806, 837
MslI	CAYNNNNRTG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	757
MunI	CAATTG	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	757
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	396, 794
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
NlaIII	CATG	3 cut(s)	522, 600, 919
NlaIV	GGNNCC	2 cut(s)	178, 883
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	1 cut(s)	919
NspV	TTCGAA	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	4 cut(s)	389, 540, 664, 754
PleI	GAGTC	2 cut(s)	73, 305
PpsI	GAGTC	2 cut(s)	73, 305
Ppu21I	YACGTR	1 cut(s)	532
PshBI	ATTAAT	1 cut(s)	837
PsiI	TTATAA	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	113, 935
PspGI	CCWGG	1 cut(s)	755
PspN4I	GGNNCC	2 cut(s)	178, 883
PspXI	VCTCGAGB	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	3 cut(s)	176, 674, 926
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	473, 546, 806, 837
SatI	GCNGC	4 cut(s)	388, 539, 663, 753
Sau3AI	GATC	7 cut(s)	176, 334, 674, 714, 775, 818, 926
SchI	GAGTC	2 cut(s)	73, 305
ScrFI	CCNGG	1 cut(s)	757
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	1 cut(s)	740
Sfr274I	CTCGAG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	691
SlaI	CTCGAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SnaBI	TACGTA	1 cut(s)	532
Sse9I	AATT	7 cut(s)	90, 214, 426, 456, 687, 792, 944
SsiI	CCGC	3 cut(s)	26, 204, 539
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	13, 583
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	4 cut(s)	229, 337, 410, 691
TasI	AATT	7 cut(s)	90, 214, 426, 456, 687, 792, 944
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	473, 546, 806, 837
Tru9I	TTAA	4 cut(s)	473, 546, 806, 837
TscAI	CASTG	4 cut(s)	16, 141, 162, 321
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	3 cut(s)	387, 662, 752
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	417, 651
TspRI	CASTG	4 cut(s)	16, 141, 162, 321
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	2 cut(s)	456, 687
XceI	RCATGY	1 cut(s)	919
XhoI	CTCGAG	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.