Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Reverse (-)

2872154 .. 2896791

Gene Structure 24638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAGTCAGGGCTTTGAGCCCAGAAGGGTCATTACCAGAGCTCGATGATTCACCGGTTTCAGTGGAGCTCGCGCCCTTCTGCAGCGAGGCCCAGTTTGATCGGCTCATCGCTGAGGCTCAACAACTCCAGCAGTTATATATCAAAGAGATTCTGCAAGTGAGTTACAGTTTGAAACTCCTTTTCGTCAACTGTGGATATCAAATTGTCAAGGAAATTTTTTTGGAAGCCAAACACTATCGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

83

Amino Acids

9.35

Weight (kDa)

4.78

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	216
AgeI	ACCGGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	43, 70
AluI	AGCT	2 cut(s)	43, 70
Alw21I	GWGCWC	2 cut(s)	45, 72
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	216
AsiGI	ACCGGT	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	45
BanII	GRGCYC	3 cut(s)	23, 45, 72
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
Bbv12I	GWGCWC	2 cut(s)	45, 72
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	45, 72
BsiSI	CCGG	1 cut(s)	56
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	23, 45, 72
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	74
BspMAI	CTGCAG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	55
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	170, 194
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	55
CviJI	RGCY	8 cut(s)	14, 21, 43, 70, 92, 106, 119, 230
CviKI_1	RGCY	8 cut(s)	14, 21, 43, 70, 92, 106, 119, 230
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Ecl136II	GAGCTC	2 cut(s)	43, 70
Eco24I	GRGCYC	3 cut(s)	23, 45, 72
Eco32I	GATATC	1 cut(s)	200
Eco53kI	GAGCTC	2 cut(s)	43, 70
EcoICRI	GAGCTC	2 cut(s)	43, 70
EcoRV	GATATC	1 cut(s)	200
EcoT38I	GRGCYC	3 cut(s)	23, 45, 72
FaiI	YATR	2 cut(s)	139, 141
Fnu4HI	GCNGC	1 cut(s)	85
FriOI	GRGCYC	3 cut(s)	23, 45, 72
Fsp4HI	GCNGC	1 cut(s)	85
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	50, 151
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	20, 88
HpyCH4III	ACNGT	2 cut(s)	170, 194
HpyCH4V	TGCA	2 cut(s)	84, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	114
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	36, 51, 69, 107, 143
Lsp1109I	GCAGC	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	23, 45, 72
MluCI	AATT	2 cut(s)	204, 216
MnlI	CCTC	2 cut(s)	82, 109
MseI	TTAA	1 cut(s)	250
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	50, 151
PinAI	ACCGGT	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	86
Psp124BI	GAGCTC	2 cut(s)	45, 72
PspPI	GGNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	2 cut(s)	45, 72
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	23, 45, 72
SetI	ASST	2 cut(s)	45, 72
SfcI	CTRYAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	2 cut(s)	204, 216
SstI	GAGCTC	2 cut(s)	45, 72
TaaI	ACNGT	2 cut(s)	170, 194
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	204, 216
TfiI	GAWTC	2 cut(s)	50, 151
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	1 cut(s)	84
TspRI	CASTG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.