Rorug04G0051800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003324
Physical Location & Seq
Reverse (-)
7993666 .. 7998508
4843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0051800.1

Sequence Viewer

Length: 276 bp
ATGGGTAAGAACCCAAATGAGTTTTATTTTGGGGTTTCTTTTAGATCTGAGCATGAACACGTACCAAGTTTTGAAGACGCGAGCCCAACACCTGTAATCGACGTCAGAGTCATCAGGACGCAGAGCAAGGTGCTAAATAGGATAAGTGCTACTTCACCAAATCTCCCTGCTGTTTCTTCACTACTGCTTCTAAGGAGCAGTATGAGTATTGCTGAAGCATTGCGATTGCAGGCAGAACTCCAAAAGCAGCTTCATGAACAACTTGAGGCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

6.27

Isoelectric Point (pI)

72.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 68 - 89 1.1e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 105
AccII CGCG 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 74
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 147
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 259
BglII AGATCT 1 cut(s) 44
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse3DI GCAATG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 218
BssMI GATC 1 cut(s) 44
BssNI GRCGYC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 82, 231
BstDEI CTNAG 2 cut(s) 48, 191
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 82, 231
CciI TCATGA 1 cut(s) 253
CseI GACGC 2 cut(s) 86, 127
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 53, 254
CviJI RGCY 2 cut(s) 84, 250
CviKI_1 RGCY 2 cut(s) 84, 250
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 2 cut(s) 48, 191
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 2 cut(s) 56, 257
FaiI YATR 3 cut(s) 54, 203, 255
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 2 cut(s) 52, 253
Fnu4HI GCNGC 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 248
HgaI GACGC 2 cut(s) 86, 127
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 56, 257
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 49, 107
Hpy188III TCNNGA 2 cut(s) 115, 254
Hpy99I CGWCG 1 cut(s) 104
HpyCH4IV ACGT 2 cut(s) 60, 102
HpyCH4V TGCA 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 48, 191
HpySE526I ACGT 2 cut(s) 60, 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 56, 257
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 100, 105, 180, 215
Lsp1109I GCAGC 1 cut(s) 259
MaeII ACGT 2 cut(s) 60, 102
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 2 cut(s) 86, 168
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 1 cut(s) 259
MseI TTAA 1 cut(s) 274
MvnI CGCG 1 cut(s) 80
NdeII GATC 1 cut(s) 44
NlaIII CATG 2 cut(s) 56, 257
PagI TCATGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 61
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 1 cut(s) 44
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 86
SetI ASST 5 cut(s) 63, 94, 105, 132, 252
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 270
TaiI ACGT 2 cut(s) 63, 105
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 270
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 3 cut(s) 69, 242, 270
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.