RLG00000001837

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003324
Physical Location & Seq
Reverse (-)
21578897 .. 21579888
992 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001837

Sequence Viewer

Length: 531 bp
ATGTTAAGTCACTTGGAGCACCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGATTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTTTAGTGTTACTAGTTCATTTCAAGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTATTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCTAACATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCAAAATCTTGTTATTCGTATACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGTGTTCTATTAATGCTCTTTGGTGCTTGGACGAGTTGAGAATTTGCAAAGGAGGTGAAGAATTTCTTTCTCTATTTTGGTTTTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.83

Weight (kDa)

8.31

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccI GTMKAC 1 cut(s) 322
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 3 cut(s) 300, 480, 500
AgsI TTSAA 3 cut(s) 112, 191, 305
AhlI ACTAGT 1 cut(s) 100
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 2 cut(s) 149, 205
AluI AGCT 2 cut(s) 149, 205
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 275, 365
ApoI RAATTY 3 cut(s) 300, 480, 500
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 2 cut(s) 300, 501
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 2 cut(s) 42, 117
AsuHPI GGTGA 1 cut(s) 506
AsuII TTCGAA 1 cut(s) 360
AvrII CCTAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 287, 377
BccI CCATC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 2 cut(s) 27, 101
BfmI CTRYAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 43
BglII AGATCT 1 cut(s) 287
BisI GCNGC 3 cut(s) 71, 276, 366
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 3 cut(s) 72, 277, 367
Bme1390I CCNGG 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu14I TTCGAA 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 26, 369
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 26, 369
BseGI GGATG 3 cut(s) 147, 253, 391
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 287, 377
BsiHKAI GWGCWC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 287, 327, 388, 431
BspACI CCGC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 357
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 360
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 26, 369
BssMI GATC 4 cut(s) 287, 327, 388, 431
BssNAI GTATAC 1 cut(s) 323
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 26
Bst1107I GTATAC 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 147, 377
BstF5I GGATG 3 cut(s) 147, 253, 391
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 117
BstKTI GATC 4 cut(s) 290, 330, 391, 434
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 4 cut(s) 287, 327, 388, 431
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 353
BstSNI TACGTA 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 287, 377
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 323
BtsCI GGATG 3 cut(s) 147, 253, 391
Cac8I GCNNGC 2 cut(s) 147, 377
CfoI GCGC 2 cut(s) 42, 117
CviAII CATG 2 cut(s) 51, 210
CviJI RGCY 5 cut(s) 25, 70, 149, 205, 368
CviKI_1 RGCY 5 cut(s) 25, 70, 149, 205, 368
DpnI GATC 4 cut(s) 289, 329, 390, 433
DpnII GATC 4 cut(s) 287, 327, 388, 431
Eco105I TACGTA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 2 cut(s) 54, 213
FaiI YATR 6 cut(s) 52, 200, 211, 229, 231, 323
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 2 cut(s) 50, 209
FauNDI CATATG 1 cut(s) 229
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 71, 276, 366
FokI GGATG 3 cut(s) 154, 260, 398
Fsp4HI GCNGC 3 cut(s) 71, 276, 366
FspBI CTAG 2 cut(s) 27, 101
GlaI GCGC 2 cut(s) 41, 116
GluI GCNGC 3 cut(s) 71, 276, 366
HaeII RGCGCY 1 cut(s) 43
HhaI GCGC 2 cut(s) 42, 117
Hin1II CATG 2 cut(s) 54, 213
Hin6I GCGC 2 cut(s) 40, 115
HinP1I GCGC 2 cut(s) 40, 115
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 50, 145, 265, 345, 355, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 54, 213
HspAI GCGC 2 cut(s) 40, 115
Kzo9I GATC 4 cut(s) 287, 327, 388, 431
LmnI GCTCC 4 cut(s) 16, 37, 339, 415
LpnPI CCDG 5 cut(s) 35, 158, 355, 367, 382
Lsp1109I GCAGC 2 cut(s) 287, 377
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 27, 101
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 8, 59, 96
MalI GATC 4 cut(s) 289, 329, 390, 433
MboI GATC 4 cut(s) 287, 327, 388, 431
MboII GAAGA 4 cut(s) 297, 308, 441, 509
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 300, 405, 480, 500
MnlI CCTC 3 cut(s) 135, 424, 485
MroXI GAANNNNTTC 2 cut(s) 300, 501
MseI TTAA 5 cut(s) 5, 78, 135, 419, 450
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 370
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeI CATATG 1 cut(s) 229
NdeII GATC 4 cut(s) 287, 327, 388, 431
NlaIII CATG 2 cut(s) 54, 213
NmuCI GTSAC 1 cut(s) 8
NspV TTCGAA 1 cut(s) 360
PdmI GAANNNNTTC 2 cut(s) 300, 501
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 72, 277, 367
Ppu21I YACGTR 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 450
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PstI CTGCAG 1 cut(s) 357
PsuI RGATCY 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 5, 78, 135, 419, 450
SatI GCNGC 3 cut(s) 71, 276, 366
Sau3AI GATC 4 cut(s) 287, 327, 388, 431
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 1 cut(s) 21
SetI ASST 5 cut(s) 66, 151, 207, 242, 496
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 353
SfuI TTCGAA 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 384
SnaBI TACGTA 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 4 cut(s) 300, 405, 480, 500
SsiI CCGC 1 cut(s) 71
SspMI CTAG 2 cut(s) 27, 101
StyD4I CCNGG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 300, 405, 480, 500
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 5 cut(s) 5, 78, 135, 419, 450
Tru9I TTAA 5 cut(s) 5, 78, 135, 419, 450
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 275, 365
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 95, 264
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 3 cut(s) 300, 480, 500
XmaJI CCTAGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 2 cut(s) 300, 501
XspI CTAG 2 cut(s) 27, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.