Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003324

Physical Location & Seq

Genomic Coordinates Forward (+)

53226251 .. 53227185

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTAAGTCACTTGGAGCGCCAGCCTAGGAACAAGGAGCGCCGTGTTGCATGGCTTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTTTGGTGTTACTAGCTCATTTCAAGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTGGTTCTCAAACAGATTGAAACAGTTATAAAGCGAAGATGGATTAGGAATACACCATATGTGGAAAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCGAAATCTTGTTATTCGTATACTGATCTTGCTCTATCAATGCAAGGGTCTACAGTTCGAAGCAGCCTGGGGCAAGCACAGGGATGATCCAAAATTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGTGTTCTGTTAATGCTCTTGGTACTTGGACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.67

Weight (kDa)

10.0

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39910
fragaria_vesca	FvH4_7g23870
malus_domestica	MD07G1212900.v1.1
prunus_persica	Prupe.2G245100_v2.0.a1 Prupe.2G245100_v2.0.a1
pyrus_communis	pycom07g19570
rosa_chinensis	RchiOBHm_Chr1g0339731 RchiOBHm_Chr1g0369221 RchiOBHm_Chr2g0110551
rosa_laevigata	RLG00000001778 RLG00000001837 RLG00000015598 RLG00000027144 RLG00000034738
rosa_multiflora	Rmu_sc0003829.1_g000022 Rmu_sc0004775.1_g000002 Rmu_sc0005807.1_g000001 Rmu_sc0008053.1_g000032
rosa_roxburghii	Rroxscaffold_4G00287840 Rroxscaffold_6G00396450 Rroxscaffold_6G00412170
rosa_rugosa	Rorug01G0349200 Rorug04G0051800 Rorug05G0139700 Rorug07G0313200
rosa_samantha	Rh1AG356100 Rh1BG319700 Rh1CG060000 Rh1CG333700 Rh1DG064000 Rh1DG350400 Rh2CG222300 Rh5CG068700 Rh7BG045300
rosa_wichuraiana	Rw1G031430 Rw7G029140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccI	GTMKAC	2 cut(s)	322, 352
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	300
AfaI	GTAC	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	112, 191
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	104, 149, 474
AluI	AGCT	3 cut(s)	104, 149, 474
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	275, 365
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	21, 42, 117
AsuII	TTCGAA	2 cut(s)	304, 360
AvrII	CCTAGG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	287, 377
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	27, 101
BfmI	CTRYAG	1 cut(s)	353
BfoI	RGCGCY	2 cut(s)	22, 43
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	3 cut(s)	71, 276, 366
BlnI	CCTAGG	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	72, 277, 367
Bme1390I	CCNGG	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu14I	TTCGAA	2 cut(s)	304, 360
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	26, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	26, 369
BseGI	GGATG	3 cut(s)	147, 253, 391
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	287, 377
BsmAI	GTCTC	1 cut(s)	155
Bsp119I	TTCGAA	2 cut(s)	304, 360
Bsp143I	GATC	4 cut(s)	287, 327, 388, 431
BspACI	CCGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	2 cut(s)	304, 360
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	26, 369
BssMI	GATC	4 cut(s)	287, 327, 388, 431
BssNAI	GTATAC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	3 cut(s)	166, 196, 357
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	2 cut(s)	304, 360
BstC8I	GCNNGC	3 cut(s)	23, 147, 377
BstF5I	GGATG	3 cut(s)	147, 253, 391
BstH2I	RGCGCY	2 cut(s)	22, 43
BstHHI	GCGC	3 cut(s)	21, 42, 117
BstKTI	GATC	4 cut(s)	290, 330, 391, 434
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	287, 327, 388, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	353
BstSNI	TACGTA	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	287, 377
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BstZ17I	GTATAC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	147, 253, 391
Cac8I	GCNNGC	3 cut(s)	23, 147, 377
CfoI	GCGC	3 cut(s)	21, 42, 117
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	7 cut(s)	25, 55, 70, 104, 149, 368, 474
CviKI_1	RGCY	7 cut(s)	25, 55, 70, 104, 149, 368, 474
CviQI	GTAC	1 cut(s)	462
DpnI	GATC	4 cut(s)	289, 329, 390, 433
DpnII	GATC	4 cut(s)	287, 327, 388, 431
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	54
FaiI	YATR	5 cut(s)	52, 200, 229, 231, 323
FatI	CATG	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	322, 352
Fnu4HI	GCNGC	3 cut(s)	71, 276, 366
FokI	GGATG	3 cut(s)	154, 260, 398
Fsp4HI	GCNGC	3 cut(s)	71, 276, 366
FspBI	CTAG	2 cut(s)	27, 101
GlaI	GCGC	3 cut(s)	20, 41, 116
GluI	GCNGC	3 cut(s)	71, 276, 366
HaeII	RGCGCY	2 cut(s)	22, 43
HhaI	GCGC	3 cut(s)	21, 42, 117
Hin1II	CATG	1 cut(s)	54
Hin6I	GCGC	3 cut(s)	19, 40, 115
HinP1I	GCGC	3 cut(s)	19, 40, 115
Hpy166II	GTNNAC	2 cut(s)	323, 353
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	2 cut(s)	323, 353
HpyCH4III	ACNGT	3 cut(s)	166, 196, 357
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	4 cut(s)	50, 145, 265, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	54
HspAI	GCGC	3 cut(s)	19, 40, 115
Kzo9I	GATC	4 cut(s)	287, 327, 388, 431
LmnI	GCTCC	3 cut(s)	16, 37, 415
LpnPI	CCDG	5 cut(s)	35, 158, 355, 367, 382
Lsp1109I	GCAGC	2 cut(s)	287, 377
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	27, 101
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	8, 59, 96
MalI	GATC	4 cut(s)	289, 329, 390, 433
MboI	GATC	4 cut(s)	287, 327, 388, 431
MboII	GAAGA	4 cut(s)	219, 297, 308, 441
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	300, 395, 405
MnlI	CCTC	2 cut(s)	135, 424
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	5 cut(s)	5, 78, 135, 419, 450
MslI	CAYNNNNRTG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	287, 327, 388, 431
NlaIII	CATG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	8
NspV	TTCGAA	2 cut(s)	304, 360
PdmI	GAANNNNTTC	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	72, 277, 367
Ppu21I	YACGTR	1 cut(s)	64
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	5, 78, 135, 419, 450
SatI	GCNGC	3 cut(s)	71, 276, 366
Sau3AI	GATC	4 cut(s)	287, 327, 388, 431
ScrFI	CCNGG	1 cut(s)	370
SetI	ASST	5 cut(s)	66, 106, 151, 242, 476
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	353
SfuI	TTCGAA	2 cut(s)	304, 360
SmiMI	CAYNNNNRTG	1 cut(s)	384
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	3 cut(s)	300, 395, 405
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	27, 101
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	166, 196, 357
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	304, 360
TasI	AATT	3 cut(s)	300, 395, 405
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	5, 78, 135, 419, 450
Tru9I	TTAA	5 cut(s)	5, 78, 135, 419, 450
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	275, 365
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	300
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	322, 352
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	27, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.