AT2G43870
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000702
Physical Location & Seq
Reverse (-)
18166336 .. 18168381
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43870.1

Sequence Viewer

Length: 1155 bp
ATGGCTTCACTTCTTGTCCTCTTCGTTTTCTTCTTCATCTCTTCTTGTTCTGCTCAATCCTACAATGTATTGTCTTTTGGAGCTAAGCCGGACGGAAAGACAGACGCAACCAAAGCTTTTATGGCGGTTTGGCAAACCGCTTGTGCATCGTCTCGTCCTGTTACCATTGTGGTTCCCAAAGGCCGGTTCTTGTTAAGAAGCGTTACTTTCGATGGTTCCAAATGCAAGCCCAAGCCCGTTACGTTCCGTATCGACGGTACATTGGTGGCTCCAGCTGATTATCGAGTTATAGGAAATGAAGACTATTGGATTTTCTTCCAGCATCTCGACGGCATCACCGTATACGGCGGAGTTCTTGACGCTCGAGGAGCTTCTTTATGGGATTGTAAAAAGTCCGGCAAGAATTGCCCCAGTGGCGCAACGACAATAGGATTTCAGAGCTCAAGCAACGTCGTGGTCTCTGGGCTAACGTCACTAAACAGCCAAATGTTCCACGTCGTCATCAACGGTTGTAACAACGTAAAGCTTCAGGGAGTCAAAGTATTAGCTGCCGGAAACAGCCCCAACACCGACGGTATCCACGTTCAGTCTTCCTCCTCCGTCTCTATATTCAATACTAAAATCTCCACCGGAGACGATTGTGTCTCCATTGGTCCCGGCACTAACGGACTATGGATCGAAAATGTCGCATGCGGCCCTGGTCATGGCATCAGCATTGGTAGTTTGGGAAAAGATAGCGTGGAGTCAGGTGTACAAAACGTGACAGTGAAAACGGTGACGTTTACGGGAACTGATAACGGAGTAAGGATCAAATCATGGGCCAGGCCCAGTAGTGGGTTCGCTAAAAACATCCGTTTCCAACATTGTGTAATGAACAATGTCGAGAACCCTATCATCATTGACCAAAACTACTGTCCTGATCACGATTGTCCTCGCCAGGTTTCGGGGATCAAAATTAGCGATGTGTTGTTTGTTGATATACATGGAACATCGGCAACTGAAGTTGGAGTGAAACTTGATTGTAGTTCTAAGAAACCATGTACCGGAATTAGACTTGAGGATGTGAAATTAACGTACCAGAATAAACCGGCTGCATCGGCTTGTACTCACGCCGGAGGGATAGAAGCTGGATTTTTTCAGCCAAATTGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

384

Amino Acids

40.81

Weight (kDa)

8.56

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 21 - 67 1.6e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 48 - 369 6.2e-87 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43870 AT3G59850 AT3G59850
fragaria_vesca FvH4_1g00290 FvH4_1g00290 FvH4_1g21842 FvH4_1g21850 FvH4_1g21851
malus_domestica MD00G1070500.v1.1 MD00G1087900.v1.1
prunus_persica Prupe.4G261700_v2.0.a1 Prupe.4G261800_v2.0.a1 Prupe.4G261900_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.7G269200_v2.0.a1
pyrus_communis pycom02g00030 pycom03g19680
rosa_chinensis RchiOBHm_Chr2g0084591 RchiOBHm_Chr2g0085391 RchiOBHm_Chr2g0115741 RchiOBHm_Chr2g0115771 RchiOBHm_Chr2g0115801 RchiOBHm_Chr2g0115811 RchiOBHm_Chr2g0115821 RchiOBHm_Chr5g0021021 RchiOBHm_Chr5g0021031
rosa_laevigata RLG00000015683 RLG00000018208 RLG00000018211 RLG00000018212
rosa_multiflora Rmu_co8137638.1_g000001 Rmu_sc0000742.1_g000006 Rmu_sc0004926.1_g000013 Rmu_sc0008355.1_g000010 Rmu_sc0011452.1_g000015 Rmu_ssc0000197.1_g000031 Rmu_ssc0000197.1_g000032 Rmu_ssc0000197.1_g000056
rosa_roxburghii Rroxscaffold_2G00127770 Rroxscaffold_2G00127780 Rroxscaffold_2G00127790 Rroxscaffold_2G00127830 Rroxscaffold_2G00127850 Rroxscaffold_2G00128630 Rroxscaffold_2G00128640 Rroxscaffold_2G00128680 Rroxscaffold_2G00128730 Rroxscaffold_2G00128740
rosa_rugosa Rorug01G0455200 Rorug01G0460100 Rorug02G0199800 Rorug02G0199900
rosa_samantha Rh2BG003000 Rh2BG267500 Rh2BG267700 Rh2BG267800 Rh2BG267900 Rh2CG003400 Rh2CG010000 Rh2CG262800 Rh2CG263200 Rh2CG263300 Rh2CG263400 Rh5CG165700 Rh5CG165800
rosa_wichuraiana Rw0G014320 Rw0G014330 Rw1G010220 Rw2G000800 Rw2G020110 Rw2G020130 Rw2G020150 Rw2G020160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AccI GTMKAC 1 cut(s) 342
AciI CCGC 4 cut(s) 125, 138, 348, 693
AclWI GGATC 3 cut(s) 683, 815, 956
AcuI CTGAAG 2 cut(s) 512, 1020
AfaI GTAC 5 cut(s) 259, 753, 1042, 1076, 1105
AfiI CCNNNNNNNGG 6 cut(s) 183, 704, 833, 834, 943, 1043
AgsI TTSAA 1 cut(s) 613
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 3 cut(s) 697, 821, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 8 cut(s) 83, 116, 275, 371, 441, 526, 548, 1127
AluI AGCT 8 cut(s) 83, 116, 275, 371, 441, 526, 548, 1127
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 5 cut(s) 156, 463, 607, 627, 649
AlwI GGATC 3 cut(s) 683, 815, 956
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 4 cut(s) 181, 694, 819, 824
ApeKI GCWGC 2 cut(s) 548, 1091
ArsI GACNNNNNNTTYG 2 cut(s) 898, 930
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 4 cut(s) 653, 695, 819, 825
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 2 cut(s) 328, 787
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 653
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 306, 582
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 2 cut(s) 535, 1078
BccI CCATC 1 cut(s) 206
BceAI ACGGC 2 cut(s) 346, 361
BciT130I CCWGG 3 cut(s) 699, 823, 938
BciVI GTATCC 1 cut(s) 587
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 5 cut(s) 156, 463, 607, 627, 649
BfuI GTATCC 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 414
BisI GCNGC 3 cut(s) 549, 694, 1092
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 3 cut(s) 550, 695, 1093
Bme1390I CCNGG 4 cut(s) 657, 699, 823, 938
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 4 cut(s) 653, 695, 819, 825
BmiI GGNNCC 4 cut(s) 174, 217, 270, 655
BmrFI CCNGG 4 cut(s) 657, 699, 823, 938
BmrI ACTGGG 2 cut(s) 405, 822
BmsI GCATC 5 cut(s) 155, 331, 342, 717, 1103
BmuI ACTGGG 2 cut(s) 405, 822
BpiI GAAGAC 2 cut(s) 306, 582
BpmI CTGGAG 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 2 cut(s) 427, 1076
BpuMI CCSGG 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 697
BsaWI WCCGGW 2 cut(s) 629, 1043
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 6 cut(s) 183, 704, 833, 834, 943, 1043
Bse118I RCCGGY 2 cut(s) 183, 1087
Bse1I ACTGG 2 cut(s) 411, 828
BseBI CCWGG 3 cut(s) 699, 823, 938
BseDI CCNNGG 1 cut(s) 697
BseGI GGATG 2 cut(s) 849, 1066
BseLI CCNNNNNNNGG 6 cut(s) 183, 704, 833, 834, 943, 1043
BseNI ACTGG 2 cut(s) 411, 828
BseRI GAGGAG 2 cut(s) 381, 586
BseXI GCAGC 2 cut(s) 535, 1078
BshFI GGCC 4 cut(s) 183, 696, 821, 826
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 9 cut(s) 89, 184, 396, 552, 630, 657, 1044, 1088, 1113
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 6 cut(s) 183, 704, 833, 834, 943, 1043
BsmAI GTCTC 5 cut(s) 156, 463, 607, 627, 649
BsmBI CGTCTC 3 cut(s) 156, 607, 627
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 4 cut(s) 183, 696, 821, 826
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 443
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 4 cut(s) 675, 807, 919, 948
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 4 cut(s) 125, 138, 348, 693
BspANI GGCC 4 cut(s) 183, 696, 821, 826
BspLI GGNNCC 4 cut(s) 174, 217, 270, 655
BspPI GGATC 3 cut(s) 683, 815, 956
BspTNI GGTCTC 1 cut(s) 463
BsrFI RCCGGY 2 cut(s) 183, 1087
BsrGI TGTACA 1 cut(s) 751
BsrI ACTGG 2 cut(s) 411, 828
BssAI RCCGGY 2 cut(s) 183, 1087
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 4 cut(s) 675, 807, 919, 948
BssNAI GTATAC 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 343
Bst2UI CCWGG 3 cut(s) 699, 823, 938
Bst4CI ACNGT 7 cut(s) 257, 340, 509, 575, 766, 775, 914
Bst6I CTCTTC 2 cut(s) 26, 46
BstAPI GCANNNNNTGC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 751
BstC8I GCNNGC 2 cut(s) 227, 691
BstDEI CTNAG 2 cut(s) 84, 1029
BstF5I GGATG 2 cut(s) 849, 1066
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 4 cut(s) 678, 810, 922, 951
BstMAI GTCTC 5 cut(s) 156, 463, 607, 627, 649
BstMBI GATC 4 cut(s) 675, 807, 919, 948
BstMWI GCNNNNNNNGC 6 cut(s) 113, 122, 368, 405, 414, 1097
BstNI CCWGG 3 cut(s) 699, 823, 938
BstNSI RCATGY 1 cut(s) 693
BstSCI CCNGG 4 cut(s) 655, 697, 821, 936
BstV1I GCAGC 2 cut(s) 535, 1078
BstV2I GAAGAC 2 cut(s) 306, 582
BstZ17I GTATAC 1 cut(s) 343
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 4 cut(s) 183, 696, 821, 826
BtgZI GCGATG 1 cut(s) 975
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 2 cut(s) 849, 1066
BtsIMutI CAGTG 2 cut(s) 418, 771
Cac8I GCNNGC 2 cut(s) 227, 691
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 2 cut(s) 183, 1087
Cfr13I GGNCC 4 cut(s) 653, 695, 819, 825
CseI GACGC 2 cut(s) 113, 368
Csp6I GTAC 5 cut(s) 258, 752, 1041, 1075, 1104
CviAII CATG 5 cut(s) 690, 704, 816, 983, 1038
CviQI GTAC 5 cut(s) 258, 752, 1041, 1075, 1104
DdeI CTNAG 2 cut(s) 84, 1029
DpnI GATC 4 cut(s) 677, 809, 921, 950
DpnII GATC 4 cut(s) 675, 807, 919, 948
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 26, 46
EarI CTCTTC 2 cut(s) 26, 46
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 512, 1020
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 441
EcoRII CCWGG 3 cut(s) 697, 821, 936
EcoT38I GRGCYC 1 cut(s) 443
Esp3I CGTCTC 3 cut(s) 156, 607, 627
FaeI CATG 5 cut(s) 693, 707, 819, 986, 1041
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FaqI GGGAC 1 cut(s) 639
FatI CATG 5 cut(s) 689, 703, 815, 982, 1037
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 549, 694, 1092
FokI GGATG 2 cut(s) 836, 1073
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 549, 694, 1092
GlaI GCGC 1 cut(s) 418
GluI GCNGC 3 cut(s) 549, 694, 1092
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 4 cut(s) 183, 696, 821, 826
HapII CCGG 9 cut(s) 89, 184, 396, 552, 630, 657, 1044, 1088, 1113
HgaI GACGC 2 cut(s) 113, 368
HhaI GCGC 1 cut(s) 419
Hin1II CATG 5 cut(s) 693, 707, 819, 986, 1041
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HindIII AAGCTT 2 cut(s) 114, 524
HinfI GANTC 2 cut(s) 534, 743
HpaII CCGG 9 cut(s) 89, 184, 396, 552, 630, 657, 1044, 1088, 1113
HphI GGTGA 2 cut(s) 328, 787
Hpy166II GTNNAC 3 cut(s) 343, 752, 783
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 5 cut(s) 326, 356, 883, 917, 923
Hpy8I GTNNAC 3 cut(s) 343, 752, 783
Hpy99I CGWCG 5 cut(s) 257, 332, 455, 500, 575
HpyCH4III ACNGT 7 cut(s) 257, 340, 509, 575, 766, 775, 914
HpyCH4IV ACGT 9 cut(s) 242, 450, 470, 495, 519, 582, 759, 779, 1073
HpyCH4V TGCA 3 cut(s) 146, 225, 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 122, 368, 405, 414, 1097
HpyF3I CTNAG 2 cut(s) 84, 1029
HpySE526I ACGT 9 cut(s) 242, 450, 470, 495, 519, 582, 759, 779, 1073
Hsp92II CATG 5 cut(s) 693, 707, 819, 986, 1041
HspAI GCGC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 4 cut(s) 675, 807, 919, 948
LmnI GCTCC 3 cut(s) 80, 274, 368
Lsp1109I GCAGC 2 cut(s) 535, 1078
LweI GCATC 5 cut(s) 155, 331, 342, 717, 1103
MaeII ACGT 9 cut(s) 242, 450, 470, 495, 519, 582, 759, 779, 1073
MaeIII GTNAC 7 cut(s) 160, 202, 238, 471, 512, 760, 775
MalI GATC 4 cut(s) 677, 809, 921, 950
MboI GATC 4 cut(s) 675, 807, 919, 948
MboII GAAGA 7 cut(s) 13, 22, 25, 33, 307, 311, 582
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 5 cut(s) 403, 954, 1047, 1067, 1144
MlyI GAGTC 2 cut(s) 543, 752
MmeI TCCRAC 2 cut(s) 883, 985
MnlI CCTC 7 cut(s) 29, 359, 604, 607, 942, 1051, 1109
MseI TTAA 2 cut(s) 194, 1070
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 9 cut(s) 89, 184, 396, 552, 630, 657, 1044, 1088, 1113
MspR9I CCNGG 4 cut(s) 657, 699, 823, 938
MvaI CCWGG 3 cut(s) 699, 823, 938
MwoI GCNNNNNNNGC 6 cut(s) 113, 122, 368, 405, 414, 1097
NciI CCSGG 1 cut(s) 657
NdeII GATC 4 cut(s) 675, 807, 919, 948
NlaIII CATG 5 cut(s) 693, 707, 819, 986, 1041
NlaIV GGNNCC 4 cut(s) 174, 217, 270, 655
NmuCI GTSAC 3 cut(s) 471, 760, 775
NspI RCATGY 1 cut(s) 693
PaeI GCATGC 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 363
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 579
PkrI GCNGC 3 cut(s) 550, 695, 1093
PleI GAGTC 2 cut(s) 542, 751
PpsI GAGTC 2 cut(s) 542, 751
Psp124BI GAGCTC 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 697, 821, 936
PspGI CCWGG 3 cut(s) 697, 821, 936
PspN4I GGNNCC 4 cut(s) 174, 217, 270, 655
PspPI GGNCC 4 cut(s) 653, 695, 819, 825
PspXI VCTCGAGB 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 5 cut(s) 259, 753, 1042, 1076, 1105
RsaNI GTAC 5 cut(s) 258, 752, 1041, 1075, 1104
SacI GAGCTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 194, 1070
SatI GCNGC 3 cut(s) 549, 694, 1092
Sau3AI GATC 4 cut(s) 675, 807, 919, 948
Sau96I GGNCC 4 cut(s) 653, 695, 819, 825
SchI GAGTC 2 cut(s) 543, 752
ScrFI CCNGG 4 cut(s) 657, 699, 823, 938
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 5 cut(s) 155, 331, 342, 717, 1103
Sfr274I CTCGAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 363, 442, 1055
SmoI CTYRAG 3 cut(s) 363, 442, 1055
SphI GCATGC 1 cut(s) 693
Sse9I AATT 5 cut(s) 403, 954, 1047, 1067, 1144
SsiI CCGC 4 cut(s) 125, 138, 348, 693
SstI GAGCTC 1 cut(s) 443
StyD4I CCNGG 4 cut(s) 655, 697, 821, 936
TaaI ACNGT 7 cut(s) 257, 340, 509, 575, 766, 775, 914
TaiI ACGT 9 cut(s) 245, 453, 473, 498, 522, 585, 762, 782, 1076
TaqI TCGA 7 cut(s) 210, 252, 283, 327, 364, 678, 882
TasI AATT 5 cut(s) 403, 954, 1047, 1067, 1144
TatI WGTACW 2 cut(s) 751, 1103
TauI GCSGC 1 cut(s) 696
Tru1I TTAA 2 cut(s) 194, 1070
Tru9I TTAA 2 cut(s) 194, 1070
TscAI CASTG 2 cut(s) 418, 771
TseFI GTSAC 3 cut(s) 471, 760, 775
TseI GCWGC 2 cut(s) 548, 1091
Tsp45I GTSAC 3 cut(s) 471, 760, 775
TspDTI ATGAA 3 cut(s) 25, 312, 887
TspGWI ACGGA 6 cut(s) 108, 236, 589, 681, 813, 842
TspRI CASTG 2 cut(s) 418, 771
VpaK11BI GGWCC 1 cut(s) 653
XceI RCATGY 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.