Rroxscaffold_2G00127770

Polygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000702
Physical Location & Seq
Forward (+)
63365061 .. 63366922
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127770.1

Sequence Viewer

Length: 1239 bp
ATGGAAAATCCCATAAGCCTCATTTTTCTCTCACTTCTTATCGTCTTCATAAACTCAGCCGTATCAACTGCAGTGATCACTTACAATGTGGCCGATTTAGGAGCCAAACCAGATGGCAAAACTGACTCAACCAAGGCCTTCCTTTCTGGATGGGCCGAAGCTTGTGCCTCGGCCAAGCCCTCGGTCATTTATGTCCCAGCCGGAAGGTTCTTGCTTCGCAATGCGATTTTCAACGGGCCATGCAAGAACAGGGCCATCACGTTTCGCATTGCTGGCACACTCGTCGCCCCTTCAGATTACCAGGTCATAGGAAATGCTGGTAACTGGCTTTTCTTTAGGCATGTGAATGGGGTTACCATCTCCGGTGGAATTCTTGACGGACAAGGCACTGGTTTGTGGGATTGCAAGGCCTCCGGCAAGGTTTGCGCCAGTGGAGCAACTACACTGGAGTTTTCCAACTCGAACAACATTGTCGTGAGTGGAGTGACATCCCTAAACGCCCAAATGTTCCACATAGTCATCAACGGCTGCAACAATGTGAAAGTGCAAGGTGTTAGGGTTTCTGCCTCTGGTCACAGCCCAAACACCGATGGAATCCACGTCCAAAAGTCCTCGGGCGTCACTATTCTCGACTCTAAGATTGCAACCGGTGACGACTGTGTCTCAATTGGTCCGGCAACAACTAATCTATGGATTGAAAACGTCGCATGTGGACCCGGCCATGGAATCAGCATTGGGAGTTTAGGCAAGGACCTGGAGGAGGATGGAGTGCAAAATGTAACGGTCAAAACTGTTACATTTACAGGTACTCAAAATGGTCTGAGAATCAAATCATGGGGAAGACCCAGTACTGGGTTTGCTAAGAACATTCTTTTCCAACATGCTGTCATGGTCAATGTCCAAAATCCGATCGTTATTGATCAAAATTATTGCCCAGGCGAAAAAGGCTGCCCTGGTCAGGTTTCGGGAGTTCAAATTAGTGACGTGACATATCAAAACATCCACGGCACATCAGCAACACAAGTTGCGGTGAAATTCGACTGTAGTTCTAGGTACCCTTGTAGCAAGATCACACTGGATGATGTGAAGCTCAGTTACAAGAACCAAGCAGCCGAAGCCTCATGTAGCCATGCCAGTGGAACAGCTGAGGCAGTTGCAGCTTTACTGCTTGAGCCTGTGGCATTGGCCGCCCATTGGGTGTTCTTGGACTCTTGGAGCCTGGCCTTGCAAATTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

412

Amino Acids

43.25

Weight (kDa)

7.07

Isoelectric Point (pI)

22.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 29 - 280 1.7e-14 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 55 - 377 5.3e-87 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43870 AT3G59850 AT3G59850
fragaria_vesca FvH4_1g00290 FvH4_1g00290 FvH4_1g21842 FvH4_1g21850 FvH4_1g21851
malus_domestica MD00G1070500.v1.1 MD00G1087900.v1.1
prunus_persica Prupe.4G261700_v2.0.a1 Prupe.4G261800_v2.0.a1 Prupe.4G261900_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.7G269200_v2.0.a1
pyrus_communis pycom02g00030 pycom03g19680
rosa_chinensis RchiOBHm_Chr2g0084591 RchiOBHm_Chr2g0085391 RchiOBHm_Chr2g0115741 RchiOBHm_Chr2g0115771 RchiOBHm_Chr2g0115801 RchiOBHm_Chr2g0115811 RchiOBHm_Chr2g0115821 RchiOBHm_Chr5g0021021 RchiOBHm_Chr5g0021031
rosa_laevigata RLG00000015683 RLG00000018208 RLG00000018211 RLG00000018212
rosa_multiflora Rmu_co8137638.1_g000001 Rmu_sc0000742.1_g000006 Rmu_sc0004926.1_g000013 Rmu_sc0008355.1_g000010 Rmu_sc0011452.1_g000015 Rmu_ssc0000197.1_g000031 Rmu_ssc0000197.1_g000032 Rmu_ssc0000197.1_g000056
rosa_roxburghii Rroxscaffold_2G00127770 Rroxscaffold_2G00127780 Rroxscaffold_2G00127790 Rroxscaffold_2G00127830 Rroxscaffold_2G00127850 Rroxscaffold_2G00128630 Rroxscaffold_2G00128640 Rroxscaffold_2G00128680 Rroxscaffold_2G00128730 Rroxscaffold_2G00128740
rosa_rugosa Rorug01G0455200 Rorug01G0460100 Rorug02G0199800 Rorug02G0199900
rosa_samantha Rh2BG003000 Rh2BG267500 Rh2BG267700 Rh2BG267800 Rh2BG267900 Rh2CG003400 Rh2CG010000 Rh2CG262800 Rh2CG263200 Rh2CG263300 Rh2CG263400 Rh5CG165700 Rh5CG165800
rosa_wichuraiana Rw0G014320 Rw0G014330 Rw1G010220 Rw2G000800 Rw2G020110 Rw2G020130 Rw2G020150 Rw2G020160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
Acc65I GGTACC 1 cut(s) 1053
AccB1I GGYRCC 1 cut(s) 1053
AciI CCGC 2 cut(s) 1028, 1188
AcoI YGGCCR 4 cut(s) 90, 171, 718, 1185
AcsI RAATTY 3 cut(s) 369, 1034, 1230
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 618
AfaI GTAC 3 cut(s) 808, 850, 1055
AfiI CCNNNNNNNGG 6 cut(s) 722, 760, 851, 852, 958, 1194
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 3 cut(s) 232, 698, 974
AjiI CACGTC 2 cut(s) 601, 985
AjnI CCWGG 5 cut(s) 300, 753, 934, 952, 1218
AluBI AGCT 4 cut(s) 161, 1090, 1145, 1160
AluI AGCT 4 cut(s) 161, 1090, 1145, 1160
Alw26I GTCTC 1 cut(s) 667
Ama87I CYCGRG 1 cut(s) 613
ApeKI GCWGC 4 cut(s) 528, 948, 1109, 1157
ApoI RAATTY 3 cut(s) 369, 1034, 1230
AsiGI ACCGGT 1 cut(s) 647
Asp718I GGTACC 1 cut(s) 1053
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 6 cut(s) 153, 236, 252, 671, 713, 751
AsuC2I CCSGG 1 cut(s) 717
AsuHPI GGTGA 2 cut(s) 662, 1042
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 3 cut(s) 671, 713, 751
BaeI ACNNNNGTAYC 2 cut(s) 1045, 1078
BanI GGYRCC 1 cut(s) 1053
BarI GAAGNNNNNNTAC 4 cut(s) 832, 864, 1079, 1111
BbsI GAAGAC 2 cut(s) 37, 847
BbvCI CCTCAGC 1 cut(s) 1146
BbvI GCAGC 4 cut(s) 515, 935, 1121, 1169
BccI CCATC 6 cut(s) 107, 144, 263, 365, 584, 758
BceAI ACGGC 3 cut(s) 44, 541, 1021
BcgI CGANNNNNNTGC 4 cut(s) 146, 180, 265, 299
BciT130I CCWGG 5 cut(s) 302, 755, 936, 954, 1220
BclI TGATCA 2 cut(s) 75, 919
BcnI CCSGG 1 cut(s) 717
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 2 cut(s) 1050, 1237
BfmI CTRYAG 2 cut(s) 69, 1042
BisI GCNGC 5 cut(s) 529, 949, 1110, 1158, 1188
BlsI GCNGC 5 cut(s) 530, 950, 1111, 1159, 1189
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 6 cut(s) 302, 717, 755, 936, 954, 1220
Bme18I GGWCC 3 cut(s) 671, 713, 751
BmeT110I CYCGRG 1 cut(s) 613
BmgBI CACGTC 2 cut(s) 601, 985
BmgT120I GGNCC 6 cut(s) 153, 236, 252, 671, 713, 751
BmiI GGNNCC 4 cut(s) 103, 715, 1055, 1217
BmrFI CCNGG 6 cut(s) 302, 717, 755, 936, 954, 1220
BmrI ACTGGG 2 cut(s) 840, 861
BmuI ACTGGG 2 cut(s) 840, 861
BpiI GAAGAC 2 cut(s) 37, 847
BpmI CTGGAG 2 cut(s) 467, 776
Bpu10I CCTNAGC 1 cut(s) 1146
BpuEI CTTGAG 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 618
BsaJI CCNNGG 8 cut(s) 132, 168, 180, 612, 721, 934, 952, 1003
BsaWI WCCGGW 2 cut(s) 362, 647
Bsc4I CCNNNNNNNGG 6 cut(s) 722, 760, 851, 852, 958, 1194
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 8 cut(s) 329, 394, 429, 450, 846, 856, 1080, 1134
Bse3DI GCAATG 2 cut(s) 226, 267
BseBI CCWGG 5 cut(s) 302, 755, 936, 954, 1220
BseDI CCNNGG 8 cut(s) 132, 168, 180, 612, 721, 934, 952, 1003
BseGI GGATG 5 cut(s) 155, 488, 769, 999, 1084
BseLI CCNNNNNNNGG 6 cut(s) 722, 760, 851, 852, 958, 1194
BseMI GCAATG 2 cut(s) 226, 267
BseMII CTCAG 4 cut(s) 69, 812, 1105, 1137
BseNI ACTGG 8 cut(s) 329, 394, 429, 450, 846, 856, 1080, 1134
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 4 cut(s) 515, 935, 1121, 1169
BseYI CCCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 912
BshNI GGYRCC 1 cut(s) 1053
BshTI ACCGGT 1 cut(s) 647
BsiEI CGRYCG 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 6 cut(s) 201, 363, 414, 648, 674, 717
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 6 cut(s) 722, 760, 851, 852, 958, 1194
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 613
Bsp143I GATC 4 cut(s) 75, 909, 919, 1068
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 2 cut(s) 1028, 1188
BspCNI CTCAG 4 cut(s) 68, 813, 1104, 1138
BspLI GGNNCC 4 cut(s) 103, 715, 1055, 1217
BspMAI CTGCAG 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 1053
BsrDI GCAATG 2 cut(s) 226, 267
BsrFI RCCGGY 1 cut(s) 647
BsrI ACTGG 8 cut(s) 329, 394, 429, 450, 846, 856, 1080, 1134
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 8 cut(s) 132, 168, 180, 612, 721, 934, 952, 1003
BssMI GATC 4 cut(s) 75, 909, 919, 1068
BssNI GRCGYC 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 132, 721
Bst2UI CCWGG 5 cut(s) 302, 755, 936, 954, 1220
Bst4CI ACNGT 4 cut(s) 659, 784, 793, 1043
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 6 cut(s) 55, 636, 821, 861, 1091, 1146
BstDSI CCRYGG 2 cut(s) 721, 1003
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 758
BstF5I GGATG 5 cut(s) 155, 488, 769, 999, 1084
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 4 cut(s) 78, 912, 922, 1071
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 4 cut(s) 75, 909, 919, 1068
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 7 cut(s) 273, 423, 434, 945, 1115, 1157, 1187
BstNI CCWGG 5 cut(s) 302, 755, 936, 954, 1220
BstNSI RCATGY 3 cut(s) 344, 711, 884
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 6 cut(s) 300, 715, 753, 934, 952, 1218
BstSFI CTRYAG 2 cut(s) 69, 1042
BstV1I GCAGC 4 cut(s) 515, 935, 1121, 1169
BstV2I GAAGAC 2 cut(s) 37, 847
BstXI CCANNNNNNTGG 1 cut(s) 1136
BtgI CCRYGG 2 cut(s) 721, 1003
BtrI CACGTC 2 cut(s) 601, 985
BtsCI GGATG 5 cut(s) 155, 488, 769, 999, 1084
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 6 cut(s) 78, 387, 436, 443, 1073, 1141
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 6 cut(s) 153, 236, 252, 671, 713, 751
CseI GACGC 1 cut(s) 607
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 807, 849, 1054
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 9 cut(s) 240, 341, 708, 722, 834, 881, 889, 1122, 1130
CviQI GTAC 3 cut(s) 807, 849, 1054
DdeI CTNAG 6 cut(s) 55, 636, 821, 861, 1091, 1146
DpnI GATC 4 cut(s) 77, 911, 921, 1070
DpnII GATC 4 cut(s) 75, 909, 919, 1068
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 4 cut(s) 90, 171, 718, 1185
Eco130I CCWWGG 2 cut(s) 132, 721
Eco147I AGGCCT 2 cut(s) 137, 410
Eco47I GGWCC 3 cut(s) 671, 713, 751
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 613
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 369
EcoRII CCWGG 5 cut(s) 300, 753, 934, 952, 1218
EcoT14I CCWWGG 2 cut(s) 132, 721
ErhI CCWWGG 2 cut(s) 132, 721
FaeI CATG 9 cut(s) 243, 344, 711, 725, 837, 884, 892, 1125, 1133
FaqI GGGAC 1 cut(s) 179
FatI CATG 9 cut(s) 239, 340, 707, 721, 833, 880, 888, 1121, 1129
FbaI TGATCA 2 cut(s) 75, 919
Fnu4HI GCNGC 5 cut(s) 529, 949, 1110, 1158, 1188
FokI GGATG 5 cut(s) 162, 475, 776, 986, 1091
Fsp4HI GCNGC 5 cut(s) 529, 949, 1110, 1158, 1188
FspBI CTAG 2 cut(s) 1050, 1237
GlaI GCGC 1 cut(s) 427
GluI GCNGC 5 cut(s) 529, 949, 1110, 1158, 1188
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 2 cut(s) 467, 776
HapII CCGG 6 cut(s) 201, 363, 414, 648, 674, 717
HgaI GACGC 1 cut(s) 607
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 9 cut(s) 243, 344, 711, 725, 837, 884, 892, 1125, 1133
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 6 cut(s) 125, 594, 632, 726, 825, 1208
HpaII CCGG 6 cut(s) 201, 363, 414, 648, 674, 717
HphI GGTGA 2 cut(s) 662, 1042
Hpy166II GTNNAC 1 cut(s) 713
Hpy188I TCNGA 3 cut(s) 295, 822, 909
Hpy188III TCNNGA 5 cut(s) 147, 374, 475, 629, 966
Hpy8I GTNNAC 1 cut(s) 713
Hpy99I CGWCG 2 cut(s) 287, 707
HpyAV CCTTC 3 cut(s) 148, 198, 300
HpyCH4III ACNGT 4 cut(s) 659, 784, 793, 1043
HpyCH4IV ACGT 4 cut(s) 260, 600, 702, 984
HpyCH4V TGCA 9 cut(s) 71, 243, 405, 531, 547, 644, 772, 1157, 1228
HpyF10VI GCNNNNNNNGC 7 cut(s) 273, 423, 434, 945, 1115, 1157, 1187
HpyF3I CTNAG 6 cut(s) 55, 636, 821, 861, 1091, 1146
HpySE526I ACGT 4 cut(s) 260, 600, 702, 984
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 9 cut(s) 243, 344, 711, 725, 837, 884, 892, 1125, 1133
HspAI GCGC 1 cut(s) 426
KpnI GGTACC 1 cut(s) 1057
Ksp22I TGATCA 2 cut(s) 75, 919
Kzo9I GATC 4 cut(s) 75, 909, 919, 1068
LmnI GCTCC 3 cut(s) 101, 434, 1215
Lsp1109I GCAGC 4 cut(s) 515, 935, 1121, 1169
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 2 cut(s) 1050, 1237
MaeII ACGT 4 cut(s) 260, 600, 702, 984
MalI GATC 4 cut(s) 77, 911, 921, 1070
MboI GATC 4 cut(s) 75, 909, 919, 1068
MboII GAAGA 2 cut(s) 37, 852
MfeI CAATTG 1 cut(s) 666
MluCI AATT 6 cut(s) 369, 666, 925, 975, 1034, 1230
MlyI GAGTC 3 cut(s) 119, 626, 1202
MmeI TCCRAC 2 cut(s) 480, 901
MslI CAYNNNNRTG 3 cut(s) 345, 473, 1134
MspA1I CMGCKG 1 cut(s) 1145
MspI CCGG 6 cut(s) 201, 363, 414, 648, 674, 717
MspR9I CCNGG 6 cut(s) 302, 717, 755, 936, 954, 1220
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 5 cut(s) 302, 755, 936, 954, 1220
MwoI GCNNNNNNNGC 7 cut(s) 273, 423, 434, 945, 1115, 1157, 1187
NciI CCSGG 1 cut(s) 717
NcoI CCATGG 1 cut(s) 721
NdeII GATC 4 cut(s) 75, 909, 919, 1068
NlaIII CATG 9 cut(s) 243, 344, 711, 725, 837, 884, 892, 1125, 1133
NlaIV GGNNCC 4 cut(s) 103, 715, 1055, 1217
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 6 cut(s) 484, 572, 619, 650, 980, 985
NspI RCATGY 3 cut(s) 344, 711, 884
PceI AGGCCT 2 cut(s) 137, 410
PfeI GAWTC 3 cut(s) 594, 726, 825
PflFI GACNNNGTC 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 5 cut(s) 530, 950, 1111, 1159, 1189
Ple19I CGATCG 1 cut(s) 912
PleI GAGTC 3 cut(s) 119, 626, 1202
PpsI GAGTC 3 cut(s) 119, 626, 1202
PpuMI RGGWCCY 1 cut(s) 751
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 5 cut(s) 300, 753, 934, 952, 1218
PspEI GGTNACC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 5 cut(s) 300, 753, 934, 952, 1218
PspN4I GGNNCC 4 cut(s) 103, 715, 1055, 1217
PspPI GGNCC 6 cut(s) 153, 236, 252, 671, 713, 751
PspPPI RGGWCCY 1 cut(s) 751
PstI CTGCAG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 659
PvuI CGATCG 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 1145
RsaI GTAC 3 cut(s) 808, 850, 1055
RsaNI GTAC 3 cut(s) 807, 849, 1054
RseI CAYNNNNRTG 3 cut(s) 345, 473, 1134
SatI GCNGC 5 cut(s) 529, 949, 1110, 1158, 1188
Sau3AI GATC 4 cut(s) 75, 909, 919, 1068
Sau96I GGNCC 6 cut(s) 153, 236, 252, 671, 713, 751
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 3 cut(s) 119, 626, 1202
ScrFI CCNGG 6 cut(s) 302, 717, 755, 936, 954, 1220
SexAI ACCWGGT 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 69, 1042
SinI GGWCC 3 cut(s) 671, 713, 751
SmiMI CAYNNNNRTG 3 cut(s) 345, 473, 1134
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
Sse9I AATT 6 cut(s) 369, 666, 925, 975, 1034, 1230
SseBI AGGCCT 2 cut(s) 137, 410
SsiI CCGC 2 cut(s) 1028, 1188
SspMI CTAG 2 cut(s) 1050, 1237
StuI AGGCCT 2 cut(s) 137, 410
StyD4I CCNGG 6 cut(s) 300, 715, 753, 934, 952, 1218
StyI CCWWGG 2 cut(s) 132, 721
TaaI ACNGT 4 cut(s) 659, 784, 793, 1043
TaiI ACGT 4 cut(s) 263, 603, 705, 987
TaqI TCGA 3 cut(s) 461, 630, 1038
TaqII GACCGA 1 cut(s) 172
TasI AATT 6 cut(s) 369, 666, 925, 975, 1034, 1230
TatI WGTACW 1 cut(s) 848
TauI GCSGC 1 cut(s) 1190
TfiI GAWTC 3 cut(s) 594, 726, 825
TscAI CASTG 6 cut(s) 78, 394, 436, 450, 1080, 1141
TseFI GTSAC 6 cut(s) 484, 572, 619, 650, 980, 985
TseI GCWGC 4 cut(s) 528, 948, 1109, 1157
Tsp45I GTSAC 6 cut(s) 484, 572, 619, 650, 980, 985
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 6 cut(s) 78, 394, 436, 450, 1080, 1141
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 3 cut(s) 671, 713, 751
XagI CCTNNNNNAGG 1 cut(s) 758
XapI RAATTY 3 cut(s) 369, 1034, 1230
XceI RCATGY 3 cut(s) 344, 711, 884
XspI CTAG 2 cut(s) 1050, 1237
ZrmI AGTACT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.