Rmu_ssc0000197.1_g000031

Polygalacturonase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000197.1
Physical Location & Seq
Forward (+)
165083 .. 166704
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000197.1_g000031.1.cds

Sequence Viewer

Length: 1176 bp
atggaaaatcccataagcttcatttttctctcactttttatagacttcataaactcagccgtatcaactgcagtcacttacaatgtggccgatttaggagccaaaccagatggcaaaactgactcaaccaaggccttcctttctggatgggctgaagcttgtgcctcggccaagcccttggtcatttatgtcccagccggaaggttcttgcttcgcaatgcgattttcaacgggccatgcaagaacagggccatcacgtttcgcattgctggcacactcgtcgccccttcagattaccaggtcataggaaatgctgataactggcttttctttaggcatgtgaatggggttaccatctccggtggaattcttgacggacaaggcactggtttgtgggattgcaaggcctccggcaaggtttgcgccagcggagcaactacactggagttttccaactcgaacaacattgtcgtgaatggagtgacatccctaaacgcccaaatgttccacatagtcatcaacggctgcaacaatgtgaaagtgcaaggtgtcagggtttctgcctctggtcacagcccaaacaccgatggaatccacgtccaaaagtcctcgggcgtcactattctcgactctaagattgcaaccggtgacgactgtgtctcaattggtccggcaacaactaatctatggattgaaaacgtcgcatgtggacccggccatggaatcagcattgggagtttaggcaaggacctggaggaggatggagtgcaaaatgtaacggtcaaaactgttacatttacaggtactcaaaatggtctgagaatcaaatcatggggaagacccagtactgggtttgctaagaacattcttttccaacatgctgtcatgttcaatgtccaaaatccgatcgttattgatcaaaattattgcccagacgaaaaagggtgccctggtcaggtttcgggagttcaaattagtgacgtgacatatcaaaacatccacggcacatcagcaacacaagttgctgtgaaattcgactgtagttcttggtacccttgtagcaagatcacactggatgatgtgaagctcagttacaagaaccaagcagccgaagcttcatgtagccatgccggtggaacagctgtgggtatggttcagccgacaagttgtttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

391

Amino Acids

41.22

Weight (kDa)

6.69

Isoelectric Point (pI)

21.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43870 AT3G59850 AT3G59850
fragaria_vesca FvH4_1g00290 FvH4_1g00290 FvH4_1g21842 FvH4_1g21850 FvH4_1g21851
malus_domestica MD00G1070500.v1.1 MD00G1087900.v1.1
prunus_persica Prupe.4G261700_v2.0.a1 Prupe.4G261800_v2.0.a1 Prupe.4G261900_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.7G269200_v2.0.a1
pyrus_communis pycom02g00030 pycom03g19680
rosa_chinensis RchiOBHm_Chr2g0084591 RchiOBHm_Chr2g0085391 RchiOBHm_Chr2g0115741 RchiOBHm_Chr2g0115771 RchiOBHm_Chr2g0115801 RchiOBHm_Chr2g0115811 RchiOBHm_Chr2g0115821 RchiOBHm_Chr5g0021021 RchiOBHm_Chr5g0021031
rosa_laevigata RLG00000015683 RLG00000018208 RLG00000018211 RLG00000018212
rosa_multiflora Rmu_co8137638.1_g000001 Rmu_sc0000742.1_g000006 Rmu_sc0004926.1_g000013 Rmu_sc0008355.1_g000010 Rmu_sc0011452.1_g000015 Rmu_ssc0000197.1_g000031 Rmu_ssc0000197.1_g000032 Rmu_ssc0000197.1_g000056
rosa_roxburghii Rroxscaffold_2G00127770 Rroxscaffold_2G00127780 Rroxscaffold_2G00127790 Rroxscaffold_2G00127830 Rroxscaffold_2G00127850 Rroxscaffold_2G00128630 Rroxscaffold_2G00128640 Rroxscaffold_2G00128680 Rroxscaffold_2G00128730 Rroxscaffold_2G00128740
rosa_rugosa Rorug01G0455200 Rorug01G0460100 Rorug02G0199800 Rorug02G0199900
rosa_samantha Rh2BG003000 Rh2BG267500 Rh2BG267700 Rh2BG267800 Rh2BG267900 Rh2CG003400 Rh2CG010000 Rh2CG262800 Rh2CG263200 Rh2CG263300 Rh2CG263400 Rh5CG165700 Rh5CG165800
rosa_wichuraiana Rw0G014320 Rw0G014330 Rw1G010220 Rw2G000800 Rw2G020110 Rw2G020130 Rw2G020150 Rw2G020160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 656
Acc65I GGTACC 1 cut(s) 1050
AccB1I GGYRCC 2 cut(s) 945, 1050
AciI CCGC 1 cut(s) 429
AcoI YGGCCR 3 cut(s) 87, 168, 715
AcsI RAATTY 2 cut(s) 366, 1031
AcuI CTGAAG 2 cut(s) 174, 273
AcyI GRCGYC 1 cut(s) 615
AfaI GTAC 3 cut(s) 805, 847, 1052
AfiI CCNNNNNNNGG 5 cut(s) 719, 757, 848, 849, 955
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 4 cut(s) 229, 695, 892, 971
AjiI CACGTC 2 cut(s) 598, 982
AjnI CCWGG 3 cut(s) 297, 750, 949
AluBI AGCT 5 cut(s) 18, 158, 1087, 1115, 1142
AluI AGCT 5 cut(s) 18, 158, 1087, 1115, 1142
Alw26I GTCTC 1 cut(s) 664
Ama87I CYCGRG 1 cut(s) 610
AoxI GGCC 7 cut(s) 87, 132, 168, 233, 249, 405, 715
ApeKI GCWGC 2 cut(s) 525, 1106
ApoI RAATTY 2 cut(s) 366, 1031
ArsI GACNNNNNNTTYG 1 cut(s) 1153
AsiGI ACCGGT 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 5 cut(s) 233, 249, 668, 710, 748
AsuC2I CCSGG 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 3 cut(s) 668, 710, 748
BaeGI GKGCMC 1 cut(s) 950
BaeI ACNNNNGTAYC 2 cut(s) 1042, 1075
BanI GGYRCC 2 cut(s) 945, 1050
BarI GAAGNNNNNNTAC 4 cut(s) 829, 861, 1076, 1108
BbsI GAAGAC 1 cut(s) 844
BbvI GCAGC 2 cut(s) 512, 1118
BccI CCATC 6 cut(s) 104, 141, 260, 362, 581, 755
BceAI ACGGC 3 cut(s) 44, 538, 1018
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 299, 752, 951
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 714
BcoDI GTCTC 1 cut(s) 664
BfmI CTRYAG 2 cut(s) 69, 1039
BisI GCNGC 2 cut(s) 526, 1107
BlsI GCNGC 2 cut(s) 527, 1108
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 4 cut(s) 299, 714, 752, 951
Bme18I GGWCC 3 cut(s) 668, 710, 748
BmeT110I CYCGRG 1 cut(s) 610
BmgBI CACGTC 2 cut(s) 598, 982
BmgT120I GGNCC 5 cut(s) 233, 249, 668, 710, 748
BmiI GGNNCC 4 cut(s) 100, 712, 947, 1052
BmrFI CCNGG 4 cut(s) 299, 714, 752, 951
BmrI ACTGGG 2 cut(s) 837, 858
BmuI ACTGGG 2 cut(s) 837, 858
BpiI GAAGAC 1 cut(s) 844
BpmI CTGGAG 2 cut(s) 464, 773
BpuMI CCSGG 1 cut(s) 714
BsaHI GRCGYC 1 cut(s) 615
BsaJI CCNNGG 7 cut(s) 129, 165, 177, 609, 718, 949, 1000
BsaWI WCCGGW 2 cut(s) 359, 644
Bsc4I CCNNNNNNNGG 5 cut(s) 719, 757, 848, 849, 955
Bse118I RCCGGY 2 cut(s) 644, 1130
Bse1I ACTGG 6 cut(s) 326, 391, 447, 843, 853, 1077
Bse3DI GCAATG 2 cut(s) 223, 264
BseBI CCWGG 3 cut(s) 299, 752, 951
BseDI CCNNGG 7 cut(s) 129, 165, 177, 609, 718, 949, 1000
BseGI GGATG 5 cut(s) 152, 485, 766, 996, 1081
BseLI CCNNNNNNNGG 5 cut(s) 719, 757, 848, 849, 955
BseMI GCAATG 2 cut(s) 223, 264
BseMII CTCAG 3 cut(s) 69, 809, 1102
BseNI ACTGG 6 cut(s) 326, 391, 447, 843, 853, 1077
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 2 cut(s) 512, 1118
BseYI CCCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 909
BshFI GGCC 7 cut(s) 89, 134, 170, 235, 251, 407, 717
BshNI GGYRCC 2 cut(s) 945, 1050
BshTI ACCGGT 1 cut(s) 644
BsiEI CGRYCG 1 cut(s) 909
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 7 cut(s) 198, 360, 411, 645, 671, 714, 1131
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 5 cut(s) 719, 757, 848, 849, 955
BsmAI GTCTC 1 cut(s) 664
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 7 cut(s) 89, 134, 170, 235, 251, 407, 717
BsoBI CYCGRG 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 950
Bsp143I GATC 3 cut(s) 906, 916, 1065
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 1 cut(s) 429
BspANI GGCC 7 cut(s) 89, 134, 170, 235, 251, 407, 717
BspCNI CTCAG 3 cut(s) 68, 810, 1101
BspLI GGNNCC 4 cut(s) 100, 712, 947, 1052
BspMAI CTGCAG 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 945, 1050
BsrDI GCAATG 2 cut(s) 223, 264
BsrFI RCCGGY 2 cut(s) 644, 1130
BsrI ACTGG 6 cut(s) 326, 391, 447, 843, 853, 1077
BssAI RCCGGY 2 cut(s) 644, 1130
BssECI CCNNGG 7 cut(s) 129, 165, 177, 609, 718, 949, 1000
BssMI GATC 3 cut(s) 906, 916, 1065
BssNI GRCGYC 1 cut(s) 615
BssT1I CCWWGG 3 cut(s) 129, 177, 718
Bst2UI CCWGG 3 cut(s) 299, 752, 951
Bst4CI ACNGT 4 cut(s) 656, 781, 790, 1040
BstACI GRCGYC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 271, 427
BstDEI CTNAG 5 cut(s) 55, 633, 818, 858, 1088
BstDSI CCRYGG 2 cut(s) 718, 1000
BstEII GGTNACC 1 cut(s) 349
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 5 cut(s) 152, 485, 766, 996, 1081
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 3 cut(s) 909, 919, 1068
BstMAI GTCTC 1 cut(s) 664
BstMBI GATC 3 cut(s) 906, 916, 1065
BstMCI CGRYCG 1 cut(s) 909
BstMWI GCNNNNNNNGC 4 cut(s) 270, 420, 431, 1112
BstNI CCWGG 3 cut(s) 299, 752, 951
BstNSI RCATGY 3 cut(s) 341, 708, 881
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 4 cut(s) 297, 712, 750, 949
BstSFI CTRYAG 2 cut(s) 69, 1039
BstSLI GKGCMC 1 cut(s) 950
BstV1I GCAGC 2 cut(s) 512, 1118
BstV2I GAAGAC 1 cut(s) 844
BstXI CCANNNNNNTGG 2 cut(s) 178, 1133
BsuRI GGCC 7 cut(s) 89, 134, 170, 235, 251, 407, 717
BtgI CCRYGG 2 cut(s) 718, 1000
BtrI CACGTC 2 cut(s) 598, 982
BtsCI GGATG 5 cut(s) 152, 485, 766, 996, 1081
BtsIMutI CAGTG 3 cut(s) 384, 440, 1070
Cac8I GCNNGC 2 cut(s) 271, 427
CfoI GCGC 1 cut(s) 425
Cfr10I RCCGGY 2 cut(s) 644, 1130
Cfr13I GGNCC 5 cut(s) 233, 249, 668, 710, 748
CseI GACGC 1 cut(s) 604
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 3 cut(s) 804, 846, 1051
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 9 cut(s) 237, 338, 705, 719, 831, 878, 886, 1119, 1127
CviQI GTAC 3 cut(s) 804, 846, 1051
DdeI CTNAG 5 cut(s) 55, 633, 818, 858, 1088
DpnI GATC 3 cut(s) 908, 918, 1067
DpnII GATC 3 cut(s) 906, 916, 1065
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
EaeI YGGCCR 3 cut(s) 87, 168, 715
Eco130I CCWWGG 3 cut(s) 129, 177, 718
Eco147I AGGCCT 2 cut(s) 134, 407
Eco47I GGWCC 3 cut(s) 668, 710, 748
Eco57I CTGAAG 2 cut(s) 174, 273
Eco88I CYCGRG 1 cut(s) 610
Eco91I GGTNACC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 3 cut(s) 297, 750, 949
EcoT14I CCWWGG 3 cut(s) 129, 177, 718
ErhI CCWWGG 3 cut(s) 129, 177, 718
FaeI CATG 9 cut(s) 240, 341, 708, 722, 834, 881, 889, 1122, 1130
FaqI GGGAC 1 cut(s) 176
FatI CATG 9 cut(s) 236, 337, 704, 718, 830, 877, 885, 1118, 1126
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 526, 1107
FokI GGATG 5 cut(s) 159, 472, 773, 983, 1088
Fsp4HI GCNGC 2 cut(s) 526, 1107
GlaI GCGC 1 cut(s) 424
GluI GCNGC 2 cut(s) 526, 1107
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 2 cut(s) 464, 773
HaeIII GGCC 7 cut(s) 89, 134, 170, 235, 251, 407, 717
HapII CCGG 7 cut(s) 198, 360, 411, 645, 671, 714, 1131
HgaI GACGC 1 cut(s) 604
HhaI GCGC 1 cut(s) 425
Hin1I GRCGYC 1 cut(s) 615
Hin1II CATG 9 cut(s) 240, 341, 708, 722, 834, 881, 889, 1122, 1130
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HindIII AAGCTT 3 cut(s) 16, 156, 1113
HinfI GANTC 5 cut(s) 122, 591, 629, 723, 822
HpaII CCGG 7 cut(s) 198, 360, 411, 645, 671, 714, 1131
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 3 cut(s) 292, 819, 906
Hpy188III TCNNGA 5 cut(s) 144, 371, 472, 626, 963
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 2 cut(s) 284, 704
HpyAV CCTTC 3 cut(s) 145, 195, 297
HpyCH4III ACNGT 4 cut(s) 656, 781, 790, 1040
HpyCH4IV ACGT 4 cut(s) 257, 597, 699, 981
HpyCH4V TGCA 7 cut(s) 71, 240, 402, 528, 544, 641, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 420, 431, 1112
HpyF3I CTNAG 5 cut(s) 55, 633, 818, 858, 1088
HpySE526I ACGT 4 cut(s) 257, 597, 699, 981
Hsp92I GRCGYC 1 cut(s) 615
Hsp92II CATG 9 cut(s) 240, 341, 708, 722, 834, 881, 889, 1122, 1130
HspAI GCGC 1 cut(s) 423
KpnI GGTACC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 3 cut(s) 906, 916, 1065
LmnI GCTCC 2 cut(s) 98, 431
Lsp1109I GCAGC 2 cut(s) 512, 1118
MabI ACCWGGT 1 cut(s) 297
MaeII ACGT 4 cut(s) 257, 597, 699, 981
MalI GATC 3 cut(s) 908, 918, 1067
MboI GATC 3 cut(s) 906, 916, 1065
MboII GAAGA 1 cut(s) 849
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 1 cut(s) 950
MluCI AATT 5 cut(s) 366, 663, 922, 972, 1031
MlyI GAGTC 2 cut(s) 116, 623
MmeI TCCRAC 2 cut(s) 477, 898
MnlI CCTC 6 cut(s) 175, 418, 574, 619, 748, 751
MslI CAYNNNNRTG 3 cut(s) 342, 470, 1131
MspA1I CMGCKG 2 cut(s) 429, 1142
MspI CCGG 7 cut(s) 198, 360, 411, 645, 671, 714, 1131
MspR9I CCNGG 4 cut(s) 299, 714, 752, 951
MunI CAATTG 1 cut(s) 663
MvaI CCWGG 3 cut(s) 299, 752, 951
MwoI GCNNNNNNNGC 4 cut(s) 270, 420, 431, 1112
NciI CCSGG 1 cut(s) 714
NcoI CCATGG 1 cut(s) 718
NdeII GATC 3 cut(s) 906, 916, 1065
NlaIII CATG 9 cut(s) 240, 341, 708, 722, 834, 881, 889, 1122, 1130
NlaIV GGNNCC 4 cut(s) 100, 712, 947, 1052
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 7 cut(s) 73, 481, 569, 616, 647, 977, 982
NspI RCATGY 3 cut(s) 341, 708, 881
PceI AGGCCT 2 cut(s) 134, 407
PfeI GAWTC 3 cut(s) 591, 723, 822
PflFI GACNNNGTC 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 2 cut(s) 527, 1108
Ple19I CGATCG 1 cut(s) 909
PleI GAGTC 2 cut(s) 116, 623
PpsI GAGTC 2 cut(s) 116, 623
PpuMI RGGWCCY 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 3 cut(s) 297, 750, 949
PspEI GGTNACC 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 3 cut(s) 297, 750, 949
PspN4I GGNNCC 4 cut(s) 100, 712, 947, 1052
PspPI GGNCC 5 cut(s) 233, 249, 668, 710, 748
PspPPI RGGWCCY 1 cut(s) 748
PstI CTGCAG 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 656
PvuI CGATCG 1 cut(s) 909
PvuII CAGCTG 1 cut(s) 1142
RsaI GTAC 3 cut(s) 805, 847, 1052
RsaNI GTAC 3 cut(s) 804, 846, 1051
RseI CAYNNNNRTG 3 cut(s) 342, 470, 1131
SatI GCNGC 2 cut(s) 526, 1107
Sau3AI GATC 3 cut(s) 906, 916, 1065
Sau96I GGNCC 5 cut(s) 233, 249, 668, 710, 748
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 2 cut(s) 116, 623
ScrFI CCNGG 4 cut(s) 299, 714, 752, 951
SduI GDGCHC 1 cut(s) 950
SexAI ACCWGGT 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 69, 1039
SinI GGWCC 3 cut(s) 668, 710, 748
SmiMI CAYNNNNRTG 3 cut(s) 342, 470, 1131
Sse9I AATT 5 cut(s) 366, 663, 922, 972, 1031
SseBI AGGCCT 2 cut(s) 134, 407
SsiI CCGC 1 cut(s) 429
StuI AGGCCT 2 cut(s) 134, 407
StyD4I CCNGG 4 cut(s) 297, 712, 750, 949
StyI CCWWGG 3 cut(s) 129, 177, 718
TaaI ACNGT 4 cut(s) 656, 781, 790, 1040
TaiI ACGT 4 cut(s) 260, 600, 702, 984
TaqI TCGA 3 cut(s) 458, 627, 1035
TasI AATT 5 cut(s) 366, 663, 922, 972, 1031
TatI WGTACW 1 cut(s) 845
TfiI GAWTC 3 cut(s) 591, 723, 822
TscAI CASTG 3 cut(s) 391, 447, 1077
TseFI GTSAC 7 cut(s) 73, 481, 569, 616, 647, 977, 982
TseI GCWGC 2 cut(s) 525, 1106
Tsp45I GTSAC 7 cut(s) 73, 481, 569, 616, 647, 977, 982
TspDTI ATGAA 3 cut(s) 10, 37, 1107
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 3 cut(s) 391, 447, 1077
Tth111I GACNNNGTC 1 cut(s) 656
VpaK11BI GGWCC 3 cut(s) 668, 710, 748
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 2 cut(s) 366, 1031
XceI RCATGY 3 cut(s) 341, 708, 881
ZrmI AGTACT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.