Rorug02G0199900

Polygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000702
Physical Location & Seq
Forward (+)
18671092 .. 18671964
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0199900.1

Sequence Viewer

Length: 309 bp
ATGGATTCCCTCTATGCCGATACTGATCGTAAGGCGTATGATGTTTTGGGCTTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTGTCAAGATTTGATGCTCTGCAGAAAGCTGTCAAAAACTACACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCTCCCTTGGATGATATCTTAAATGTTTGCTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

102

Amino Acids

11.3

Weight (kDa)

6.54

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 4 - 81 5.9e-11 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43870 AT3G59850 AT3G59850
fragaria_vesca FvH4_1g00290 FvH4_1g00290 FvH4_1g21842 FvH4_1g21850 FvH4_1g21851
malus_domestica MD00G1070500.v1.1 MD00G1087900.v1.1
prunus_persica Prupe.4G261700_v2.0.a1 Prupe.4G261800_v2.0.a1 Prupe.4G261900_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.7G269200_v2.0.a1
pyrus_communis pycom02g00030 pycom03g19680
rosa_chinensis RchiOBHm_Chr2g0084591 RchiOBHm_Chr2g0085391 RchiOBHm_Chr2g0115741 RchiOBHm_Chr2g0115771 RchiOBHm_Chr2g0115801 RchiOBHm_Chr2g0115811 RchiOBHm_Chr2g0115821 RchiOBHm_Chr5g0021021 RchiOBHm_Chr5g0021031
rosa_laevigata RLG00000015683 RLG00000018208 RLG00000018211 RLG00000018212
rosa_multiflora Rmu_co8137638.1_g000001 Rmu_sc0000742.1_g000006 Rmu_sc0004926.1_g000013 Rmu_sc0008355.1_g000010 Rmu_sc0011452.1_g000015 Rmu_ssc0000197.1_g000031 Rmu_ssc0000197.1_g000032 Rmu_ssc0000197.1_g000056
rosa_roxburghii Rroxscaffold_2G00127770 Rroxscaffold_2G00127780 Rroxscaffold_2G00127790 Rroxscaffold_2G00127830 Rroxscaffold_2G00127850 Rroxscaffold_2G00128630 Rroxscaffold_2G00128640 Rroxscaffold_2G00128680 Rroxscaffold_2G00128730 Rroxscaffold_2G00128740
rosa_rugosa Rorug01G0455200 Rorug01G0460100 Rorug02G0199800 Rorug02G0199900
rosa_samantha Rh2BG003000 Rh2BG267500 Rh2BG267700 Rh2BG267800 Rh2BG267900 Rh2CG003400 Rh2CG010000 Rh2CG262800 Rh2CG263200 Rh2CG263300 Rh2CG263400 Rh5CG165700 Rh5CG165800
rosa_wichuraiana Rw0G014320 Rw0G014330 Rw1G010220 Rw2G000800 Rw2G020110 Rw2G020130 Rw2G020150 Rw2G020160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 82, 152, 208
AluBI AGCT 3 cut(s) 89, 131, 220
AluI AGCT 3 cut(s) 89, 131, 220
ApeKI GCWGC 2 cut(s) 217, 288
ArsI GACNNNNNNTTYG 3 cut(s) 89, 121, 285
AsuHPI GGTGA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 229, 275
BclI TGATCA 1 cut(s) 253
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 2 cut(s) 218, 289
BlsI GCNGC 2 cut(s) 219, 290
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 201, 274
BseJI GATNNNNATC 1 cut(s) 24
BseXI GCAGC 2 cut(s) 229, 275
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 25, 253
BspMAI CTGCAG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 25, 253
BssT1I CCWWGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 201, 274
BstKTI GATC 2 cut(s) 28, 256
BstMBI GATC 2 cut(s) 25, 253
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 229, 275
BstV2I GAAGAC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 201, 274
CviAII CATG 1 cut(s) 257
CviJI RGCY 5 cut(s) 51, 89, 131, 155, 220
CviKI_1 RGCY 5 cut(s) 51, 89, 131, 155, 220
DpnI GATC 2 cut(s) 27, 255
DpnII GATC 2 cut(s) 25, 253
Eco130I CCWWGG 1 cut(s) 264
Eco32I GATATC 1 cut(s) 274
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 260
FaiI YATR 6 cut(s) 15, 39, 55, 60, 228, 258
FaqI GGGAC 1 cut(s) 259
FatI CATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 218, 289
FokI GGATG 2 cut(s) 208, 281
Fsp4HI GCNGC 2 cut(s) 218, 289
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 218, 289
GsuI CTGGAG 1 cut(s) 144
Hin1II CATG 1 cut(s) 260
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 3 cut(s) 108, 161, 306
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 95, 124, 291
Hsp92II CATG 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 25, 253
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 4 cut(s) 99, 173, 174, 234
Lsp1109I GCAGC 2 cut(s) 229, 275
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 180
MalI GATC 2 cut(s) 27, 255
MboI GATC 2 cut(s) 25, 253
MboII GAAGA 2 cut(s) 70, 196
MnlI CCTC 2 cut(s) 20, 185
MseI TTAA 1 cut(s) 278
NdeII GATC 2 cut(s) 25, 253
NlaIII CATG 1 cut(s) 260
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 219, 290
PstI CTGCAG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 218, 289
Sau3AI GATC 2 cut(s) 25, 253
SetI ASST 6 cut(s) 91, 102, 133, 214, 222, 253
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 122
SgeI CNNG 9 cut(s) 98, 102, 120, 173, 200, 243, 261, 269, 277
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 70
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 2 cut(s) 217, 288
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.