Prupe.4G261900_v2.0.a1

Polygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000702
Physical Location & Seq
Forward (+)
19046344 .. 19049605
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G261900.1

Sequence Viewer

Length: 1182 bp
ATGGCGAACCGTAGAAGCCTCTTTTCTCTCTCACTTATCTTTGTGTTCATGATCAACTCAGCCATAGCCACTCCAGTCACATACAATGTGGCCAGTTTAGGAGCCAAAGCAGATGGCAAGACTGACTCCACAAAAGCCTTCCTCTTTGCATGGGCTAAAGCTTGTGCCTCGATGAATCCCGGTGTCATTTATGTGCCGGCAGGAACGTTCTTTCTTCGCGATGTGGTGTTCAGTGGGCCTTGCAAGAACAATGCCATCACCTTCCGCATTGCCGGAACCCTTGTGGCCCCGTCGGATTACCGGGTCATCGGTAATGCAGCTAACTGGATTTTCTTTCACCATGTAAACGGGGTTACCATATCAGGTGGAATTCTTGACGGCCAAGGCACGGCCTTGTGGGCTTGCAAGGCCTCTCATGGCGAGAGTTGTCCCAGCGGAGCAACGACTTTGGGTTTTTCCGACTCAAACAACATCGTGGTGAGTGGATTGGCATCCCTAAACAGCCAAATGTTCCACATAGTCATCAACGACTGCCAAAATGTGCAAATGCAAGGTGTCAGGGTTTCTGCTTCCGGGAACAGCCCTAACACCGATGGCATTCATGTCCAAATGTCATCTGGTGTCACAATCCTCAACTCCAAGATTGCAACCGGTGACGATTGTGTCTCAATTGGCCCCGGAACCTCAAATTTGTGGATAGAAGGCGTTGCTTGTGGACCTGGCCATGGAATTAGCATTGGAAGTCTAGGCAAGGAGCAAGAAGAGGCCGGTGTACAAAATGTAACAGTTAAAACGGTTACCTTTACTGGTACTCAGAATGGTCTAAGAATCAAGTCATGGGGGAGGCCAAGCACTGGGTTTGCTAGAAATATTCTTTTCCAACATGCTACAATGGTCAATGTCGAAAATCCTATTGTCATAGATCAACATTATTGCCCCGACAACAAAGGGTGCCCTGGTCAGGTTTCCGGAGTTCAAATTAGCGATGTGACATACGAAGACATACACGGTACATCAGCAACAGAAGTTGCAGTAAAATTTGATTGCAGTCCCAAGCACCCTTGCAGCGAGATCAAATTGGAGGATGTGAAGCTTACTTACAAGAACCAAGCAGCTGAGTCTTCATGTAGCCATGCAGATGGAACAACTGAGGGTGTGGTTCAGCCTACAAGTTGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

394

Amino Acids

41.33

Weight (kDa)

6.24

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000702)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43870 AT3G59850 AT3G59850
fragaria_vesca FvH4_1g00290 FvH4_1g00290 FvH4_1g21842 FvH4_1g21850 FvH4_1g21851
malus_domestica MD00G1070500.v1.1 MD00G1087900.v1.1
prunus_persica Prupe.4G261700_v2.0.a1 Prupe.4G261800_v2.0.a1 Prupe.4G261900_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.4G262200_v2.0.a1 Prupe.7G269200_v2.0.a1
pyrus_communis pycom02g00030 pycom03g19680
rosa_chinensis RchiOBHm_Chr2g0084591 RchiOBHm_Chr2g0085391 RchiOBHm_Chr2g0115741 RchiOBHm_Chr2g0115771 RchiOBHm_Chr2g0115801 RchiOBHm_Chr2g0115811 RchiOBHm_Chr2g0115821 RchiOBHm_Chr5g0021021 RchiOBHm_Chr5g0021031
rosa_laevigata RLG00000015683 RLG00000018208 RLG00000018211 RLG00000018212
rosa_multiflora Rmu_co8137638.1_g000001 Rmu_sc0000742.1_g000006 Rmu_sc0004926.1_g000013 Rmu_sc0008355.1_g000010 Rmu_sc0011452.1_g000015 Rmu_ssc0000197.1_g000031 Rmu_ssc0000197.1_g000032 Rmu_ssc0000197.1_g000056
rosa_roxburghii Rroxscaffold_2G00127770 Rroxscaffold_2G00127780 Rroxscaffold_2G00127790 Rroxscaffold_2G00127830 Rroxscaffold_2G00127850 Rroxscaffold_2G00128630 Rroxscaffold_2G00128640 Rroxscaffold_2G00128680 Rroxscaffold_2G00128730 Rroxscaffold_2G00128740
rosa_rugosa Rorug01G0455200 Rorug01G0460100 Rorug02G0199800 Rorug02G0199900
rosa_samantha Rh2BG003000 Rh2BG267500 Rh2BG267700 Rh2BG267800 Rh2BG267900 Rh2CG003400 Rh2CG010000 Rh2CG262800 Rh2CG263200 Rh2CG263300 Rh2CG263400 Rh5CG165700 Rh5CG165800
rosa_wichuraiana Rw0G014320 Rw0G014330 Rw1G010220 Rw2G000800 Rw2G020110 Rw2G020130 Rw2G020150 Rw2G020160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 854
AccII CGCG 1 cut(s) 219
AccIII TCCGGA 1 cut(s) 968
AciI CCGC 2 cut(s) 265, 435
AclI AACGTT 1 cut(s) 206
AcoI YGGCCR 3 cut(s) 90, 379, 721
AcsI RAATTY 3 cut(s) 369, 688, 1037
AfaI GTAC 3 cut(s) 774, 811, 1012
AfiI CCNNNNNNNGG 4 cut(s) 388, 725, 854, 961
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 1 cut(s) 977
AjnI CCWGG 2 cut(s) 718, 955
AluBI AGCT 4 cut(s) 161, 320, 1093, 1115
AluI AGCT 4 cut(s) 161, 320, 1093, 1115
Alw26I GTCTC 1 cut(s) 670
Aor13HI TCCGGA 1 cut(s) 968
ApeKI GCWGC 3 cut(s) 317, 1065, 1112
ApoI RAATTY 3 cut(s) 369, 688, 1037
AsiGI ACCGGT 1 cut(s) 650
AspS9I GGNCC 4 cut(s) 236, 286, 674, 716
AsuC2I CCSGG 4 cut(s) 180, 302, 574, 678
AsuHPI GGTGA 4 cut(s) 250, 329, 490, 665
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 956
BalI TGGCCA 2 cut(s) 92, 723
BanI GGYRCC 1 cut(s) 951
BarI GAAGNNNNNNTAC 2 cut(s) 1082, 1114
BbsI GAAGAC 2 cut(s) 1005, 1113
BbvI GCAGC 3 cut(s) 329, 1077, 1124
BccI CCATC 4 cut(s) 107, 263, 587, 1133
BceAI ACGGC 2 cut(s) 394, 405
BciT130I CCWGG 2 cut(s) 720, 957
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 4 cut(s) 180, 302, 574, 678
BcoDI GTCTC 1 cut(s) 670
BfaI CTAG 2 cut(s) 746, 864
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 3 cut(s) 318, 1066, 1113
BlsI GCNGC 3 cut(s) 319, 1067, 1114
Bme1390I CCNGG 6 cut(s) 180, 302, 574, 678, 720, 957
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 4 cut(s) 236, 286, 674, 716
BmiI GGNNCC 6 cut(s) 103, 277, 288, 676, 682, 953
BmrFI CCNGG 6 cut(s) 180, 302, 574, 678, 720, 957
BmrI ACTGGG 1 cut(s) 864
BmsI GCATC 1 cut(s) 500
BmuI ACTGGG 1 cut(s) 864
BpiI GAAGAC 2 cut(s) 1005, 1113
BpmI CTGGAG 1 cut(s) 57
BpuMI CCSGG 4 cut(s) 180, 302, 574, 678
BsaBI GATNNNNATC 1 cut(s) 490
BsaJI CCNNGG 4 cut(s) 382, 676, 724, 955
BsaWI WCCGGW 2 cut(s) 650, 968
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 725, 854, 961
Bse118I RCCGGY 3 cut(s) 196, 650, 767
Bse1I ACTGG 5 cut(s) 74, 93, 329, 811, 859
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 968
BseBI CCWGG 2 cut(s) 720, 957
BseDI CCNNGG 4 cut(s) 382, 676, 724, 955
BseGI GGATG 2 cut(s) 491, 1090
BseJI GATNNNNATC 1 cut(s) 490
BseLI CCNNNNNNNGG 4 cut(s) 388, 725, 854, 961
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 72, 827, 1107, 1140
BseNI ACTGG 5 cut(s) 74, 93, 329, 811, 859
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 3 cut(s) 329, 1077, 1124
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 951
BshTI ACCGGT 1 cut(s) 650
BsiSI CCGG 9 cut(s) 180, 197, 273, 301, 573, 651, 678, 768, 969
BslFI GGGAC 2 cut(s) 414, 1035
BslI CCNNNNNNNGG 4 cut(s) 388, 725, 854, 961
BsmAI GTCTC 1 cut(s) 670
BsmFI GGGAC 2 cut(s) 414, 1035
BsmI GAATGC 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 956
Bsp13I TCCGGA 1 cut(s) 968
Bsp1407I TGTACA 1 cut(s) 772
Bsp143I GATC 3 cut(s) 51, 922, 1071
Bsp19I CCATGG 1 cut(s) 724
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 2 cut(s) 265, 435
BspCNI CTCAG 4 cut(s) 71, 826, 1108, 1141
BspEI TCCGGA 1 cut(s) 968
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 6 cut(s) 103, 277, 288, 676, 682, 953
BspT107I GGYRCC 1 cut(s) 951
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 3 cut(s) 196, 650, 767
BsrGI TGTACA 1 cut(s) 772
BsrI ACTGG 5 cut(s) 74, 93, 329, 811, 859
BssAI RCCGGY 3 cut(s) 196, 650, 767
BssECI CCNNGG 4 cut(s) 382, 676, 724, 955
BssMI GATC 3 cut(s) 51, 922, 1071
BssT1I CCWWGG 2 cut(s) 382, 724
Bst2UI CCWGG 2 cut(s) 720, 957
Bst4CI ACNGT 4 cut(s) 11, 787, 796, 1010
Bst6I CTCTTC 1 cut(s) 756
BstAUI TGTACA 1 cut(s) 772
BstC8I GCNNGC 2 cut(s) 198, 403
BstDEI CTNAG 5 cut(s) 58, 813, 824, 1116, 1149
BstDSI CCRYGG 1 cut(s) 724
BstEII GGTNACC 2 cut(s) 352, 796
BstF5I GGATG 2 cut(s) 491, 1090
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 3 cut(s) 54, 925, 1074
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 3 cut(s) 51, 922, 1071
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstNI CCWGG 2 cut(s) 720, 957
BstNSI RCATGY 1 cut(s) 887
BstPI GGTNACC 2 cut(s) 352, 796
BstSCI CCNGG 6 cut(s) 178, 300, 572, 676, 718, 955
BstSLI GKGCMC 1 cut(s) 956
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 329, 1077, 1124
BstV2I GAAGAC 2 cut(s) 1005, 1113
BstXI CCANNNNNNTGG 1 cut(s) 1139
BtgI CCRYGG 1 cut(s) 724
BtgZI GCGATG 2 cut(s) 234, 999
BtsCI GGATG 2 cut(s) 491, 1090
BtsIMutI CAGTG 2 cut(s) 238, 852
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 198, 403
CciI TCATGA 1 cut(s) 48
Cfr10I RCCGGY 3 cut(s) 196, 650, 767
Cfr13I GGNCC 4 cut(s) 236, 286, 674, 716
Csp6I GTAC 3 cut(s) 773, 810, 1011
CspAI ACCGGT 1 cut(s) 650
CviQI GTAC 3 cut(s) 773, 810, 1011
DdeI CTNAG 5 cut(s) 58, 813, 824, 1116, 1149
DpnI GATC 3 cut(s) 53, 924, 1073
DpnII GATC 3 cut(s) 51, 922, 1071
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 3 cut(s) 90, 379, 721
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 2 cut(s) 382, 724
Eco147I AGGCCT 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 716
Eco91I GGTNACC 2 cut(s) 352, 796
EcoO65I GGTNACC 2 cut(s) 352, 796
EcoRI GAATTC 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 718, 955
EcoT14I CCWWGG 2 cut(s) 382, 724
ErhI CCWWGG 2 cut(s) 382, 724
FaqI GGGAC 2 cut(s) 414, 1035
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 318, 1066, 1113
FokI GGATG 2 cut(s) 478, 1097
Fsp4HI GCNGC 3 cut(s) 318, 1066, 1113
FspBI CTAG 2 cut(s) 746, 864
GluI GCNGC 3 cut(s) 318, 1066, 1113
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 9 cut(s) 180, 197, 273, 301, 573, 651, 678, 768, 969
HindIII AAGCTT 2 cut(s) 159, 1091
HinfI GANTC 5 cut(s) 125, 175, 461, 828, 1118
HpaII CCGG 9 cut(s) 180, 197, 273, 301, 573, 651, 678, 768, 969
HphI GGTGA 4 cut(s) 250, 329, 490, 665
Hpy166II GTNNAC 3 cut(s) 346, 716, 773
Hpy188I TCNGA 3 cut(s) 295, 460, 816
Hpy188III TCNNGA 4 cut(s) 49, 218, 374, 969
Hpy8I GTNNAC 3 cut(s) 346, 716, 773
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 148, 271, 695
HpyCH4III ACNGT 4 cut(s) 11, 787, 796, 1010
HpyCH4IV ACGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 5 cut(s) 58, 813, 824, 1116, 1149
HpySE526I ACGT 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 968
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 922, 1071
LmnI GCTCC 3 cut(s) 101, 437, 754
Lsp1109I GCAGC 3 cut(s) 329, 1077, 1124
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 746, 864
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 7 cut(s) 76, 352, 622, 653, 781, 796, 988
MalI GATC 3 cut(s) 53, 924, 1073
MboI GATC 3 cut(s) 51, 922, 1071
MboII GAAGA 4 cut(s) 206, 773, 1010, 1113
MfeI CAATTG 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 956
MlsI TGGCCA 2 cut(s) 92, 723
MluCI AATT 7 cut(s) 369, 669, 688, 729, 978, 1037, 1076
MluNI TGGCCA 2 cut(s) 92, 723
MlyI GAGTC 3 cut(s) 119, 455, 1127
MmeI TCCRAC 3 cut(s) 273, 483, 904
Mox20I TGGCCA 2 cut(s) 92, 723
MroI TCCGGA 1 cut(s) 968
MroNI GCCGGC 1 cut(s) 196
MscI TGGCCA 2 cut(s) 92, 723
MseI TTAA 1 cut(s) 789
MslI CAYNNNNRTG 3 cut(s) 191, 476, 1137
Msp20I TGGCCA 2 cut(s) 92, 723
MspA1I CMGCKG 2 cut(s) 435, 1115
MspI CCGG 9 cut(s) 180, 197, 273, 301, 573, 651, 678, 768, 969
MspR9I CCNGG 6 cut(s) 180, 302, 574, 678, 720, 957
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 2 cut(s) 720, 957
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 4 cut(s) 180, 302, 574, 678
NcoI CCATGG 1 cut(s) 724
NdeII GATC 3 cut(s) 51, 922, 1071
NgoMIV GCCGGC 1 cut(s) 196
NlaIV GGNNCC 6 cut(s) 103, 277, 288, 676, 682, 953
NmuCI GTSAC 4 cut(s) 76, 622, 653, 988
NruI TCGCGA 1 cut(s) 219
NspI RCATGY 1 cut(s) 887
PagI TCATGA 1 cut(s) 48
PceI AGGCCT 1 cut(s) 410
PctI GAATGC 1 cut(s) 597
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 175, 828
PflMI CCANNNNNTGG 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 572
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 3 cut(s) 319, 1067, 1114
PleI GAGTC 3 cut(s) 119, 455, 1126
PpsI GAGTC 3 cut(s) 119, 455, 1126
Psp1406I AACGTT 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 718, 955
PspEI GGTNACC 2 cut(s) 352, 796
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 718, 955
PspN4I GGNNCC 6 cut(s) 103, 277, 288, 676, 682, 953
PspPI GGNCC 4 cut(s) 236, 286, 674, 716
PvuII CAGCTG 1 cut(s) 1115
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 3 cut(s) 774, 811, 1012
RsaNI GTAC 3 cut(s) 773, 810, 1011
RseI CAYNNNNRTG 3 cut(s) 191, 476, 1137
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 3 cut(s) 318, 1066, 1113
Sau3AI GATC 3 cut(s) 51, 922, 1071
Sau96I GGNCC 4 cut(s) 236, 286, 674, 716
SchI GAGTC 3 cut(s) 119, 455, 1127
ScrFI CCNGG 6 cut(s) 180, 302, 574, 678, 720, 957
SduI GDGCHC 1 cut(s) 956
SfaNI GCATC 1 cut(s) 500
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 3 cut(s) 191, 476, 1137
Sse9I AATT 7 cut(s) 369, 669, 688, 729, 978, 1037, 1076
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 2 cut(s) 265, 435
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 746, 864
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 6 cut(s) 178, 300, 572, 676, 718, 955
StyI CCWWGG 2 cut(s) 382, 724
TaaI ACNGT 4 cut(s) 11, 787, 796, 1010
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 170, 903
TasI AATT 7 cut(s) 369, 669, 688, 729, 978, 1037, 1076
TatI WGTACW 1 cut(s) 772
TfiI GAWTC 2 cut(s) 175, 828
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 2 cut(s) 238, 859
TseFI GTSAC 4 cut(s) 76, 622, 653, 988
TseI GCWGC 3 cut(s) 317, 1065, 1112
Tsp45I GTSAC 4 cut(s) 76, 622, 653, 988
TspDTI ATGAA 4 cut(s) 37, 188, 590, 1113
TspRI CASTG 2 cut(s) 238, 859
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 3 cut(s) 369, 688, 1037
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XspI CTAG 2 cut(s) 746, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.