Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

18685898 .. 18688061

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGCTGCGTCTCTGTCGTCATCGACTTCCTCTTCCTCTGACTTTGAGCAGCTCTGTCTTCTTCTCGAAATCGTCTCCTGTTTCTTCTGCTTTCATGGATGCTTCAAATCCCAATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGCGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCAGGGTCGTGGCGACGGTGGAGGCGGAAAGGATAGAATCGATGCACTTGGACGACTCTTGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAAACTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGGCTGTGAGAAGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCATTCGATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCACCAGAAGAAGCTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTAGCATCGGGCTTAAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACAGATGGTGAAGTGATTAGTGGCATGAGAAGAAATGTAAATGTTATCATCTTCCTCGACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATTTTGACTGAAGGCATTGATGGTGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGGCAATCCATACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

289

Amino Acids

32.3

Weight (kDa)

9.61

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	82 - 262	2.4e-59	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	216, 517
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccII	CGCG	1 cut(s)	486
AciI	CCGC	2 cut(s)	165, 237
AcsI	RAATTY	2 cut(s)	361, 592
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	5 cut(s)	108, 313, 344, 367, 743
AluBI	AGCT	5 cut(s)	54, 304, 475, 560, 737
AluI	AGCT	5 cut(s)	54, 304, 475, 560, 737
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	5 cut(s)	17, 81, 142, 202, 458
AoxI	GGCC	2 cut(s)	496, 842
ApeKI	GCWGC	2 cut(s)	7, 51
ApoI	RAATTY	2 cut(s)	361, 592
AspLEI	GCGC	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	335, 540, 686
AxyI	CCTNAGG	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	5 cut(s)	320, 611, 665, 740, 794
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcoDI	GTCTC	5 cut(s)	17, 81, 142, 202, 458
BfaI	CTAG	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	850
BisI	GCNGC	2 cut(s)	8, 52
BlsI	GCNGC	2 cut(s)	9, 53
BmsI	GCATC	3 cut(s)	91, 244, 620
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	546
Bsa29I	ATCGAT	2 cut(s)	252, 459
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	156, 563
Bse21I	CCTNAGG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	198
BseCI	ATCGAT	2 cut(s)	252, 459
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMII	CTCAG	4 cut(s)	164, 227, 291, 296
BseNI	ACTGG	2 cut(s)	156, 563
BseRI	GAGGAG	2 cut(s)	189, 192
BseXI	GCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	498, 844
BshVI	ATCGAT	2 cut(s)	252, 459
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	5 cut(s)	17, 81, 142, 202, 458
BsmBI	CGTCTC	2 cut(s)	17, 81
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	498, 844
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	199, 504, 831, 847
BspACI	CCGC	2 cut(s)	165, 237
BspANI	GGCC	2 cut(s)	498, 844
BspCNI	CTCAG	4 cut(s)	163, 226, 292, 297
BspDI	ATCGAT	2 cut(s)	252, 459
BspFNI	CGCG	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	156, 563
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	4 cut(s)	199, 504, 831, 847
BssT1I	CCWWGG	1 cut(s)	493
Bst4CI	ACNGT	4 cut(s)	230, 447, 514, 546
Bst6I	CTCTTC	2 cut(s)	39, 145
BstAUI	TGTACA	1 cut(s)	571
BstDEI	CTNAG	5 cut(s)	150, 213, 300, 305, 607
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	202, 507, 834, 850
BstMAI	GTCTC	5 cut(s)	17, 81, 142, 202, 458
BstMBI	GATC	4 cut(s)	199, 504, 831, 847
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	850
BstNSI	RCATGY	1 cut(s)	644
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	52
Bsu15I	ATCGAT	2 cut(s)	252, 459
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	498, 844
BsuTUI	ATCGAT	2 cut(s)	252, 459
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	570
CfoI	GCGC	1 cut(s)	488
ClaI	ATCGAT	2 cut(s)	252, 459
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	5 cut(s)	97, 316, 575, 641, 691
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	5 cut(s)	150, 213, 300, 305, 607
DpnI	GATC	4 cut(s)	201, 506, 833, 849
DpnII	GATC	4 cut(s)	199, 504, 831, 847
DrdI	GACNNNNNNGTC	2 cut(s)	216, 517
DseDI	GACNNNNNNGTC	2 cut(s)	216, 517
Eam1104I	CTCTTC	2 cut(s)	39, 145
EarI	CTCTTC	2 cut(s)	39, 145
EciI	GGCGGA	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	810
Eco81I	CCTNAGG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	2 cut(s)	17, 81
FaeI	CATG	5 cut(s)	100, 319, 578, 644, 694
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	5 cut(s)	96, 315, 574, 640, 690
FauNDI	CATATG	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	8, 52
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	2 cut(s)	8, 52
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	2 cut(s)	8, 52
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	498, 844
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	100, 319, 578, 644, 694
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	6 cut(s)	249, 267, 481, 518, 599, 836
HphI	GGTGA	3 cut(s)	335, 540, 686
Hpy166II	GTNNAC	2 cut(s)	572, 646
Hpy188I	TCNGA	4 cut(s)	42, 523, 769, 869
Hpy188III	TCNNGA	8 cut(s)	67, 123, 271, 478, 508, 730, 740, 826
Hpy8I	GTNNAC	2 cut(s)	572, 646
Hpy99I	CGWCG	3 cut(s)	207, 230, 514
HpyAV	CCTTC	3 cut(s)	154, 423, 785
HpyCH4III	ACNGT	4 cut(s)	230, 447, 514, 546
HpyCH4V	TGCA	3 cut(s)	257, 377, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	850
HpyF3I	CTNAG	5 cut(s)	150, 213, 300, 305, 607
Hsp92II	CATG	5 cut(s)	100, 319, 578, 644, 694
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	199, 504, 831, 847
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	93, 169, 200, 371, 564, 576, 825, 839, 858
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	3 cut(s)	91, 244, 620
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	393, 528, 546
MalI	GATC	4 cut(s)	201, 506, 833, 849
MboI	GATC	4 cut(s)	199, 504, 831, 847
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	115, 361, 411, 592
MlyI	GAGTC	3 cut(s)	261, 527, 845
Mph1103I	ATGCAT	1 cut(s)	642
MseI	TTAA	5 cut(s)	336, 354, 389, 534, 620
Mva1269I	GAATGC	1 cut(s)	642
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	850
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	4 cut(s)	199, 504, 831, 847
NlaIII	CATG	5 cut(s)	100, 319, 578, 644, 694
NmuCI	GTSAC	2 cut(s)	393, 546
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	1 cut(s)	644
PctI	GAATGC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	249, 481, 599
PflMI	CCANNNNNTGG	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	9, 53
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	3 cut(s)	261, 526, 844
PpsI	GAGTC	3 cut(s)	261, 526, 844
Psp124BI	GAGCTC	1 cut(s)	477
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	336, 354, 389, 534, 620
SatI	GCNGC	2 cut(s)	8, 52
Sau3AI	GATC	4 cut(s)	199, 504, 831, 847
SchI	GAGTC	3 cut(s)	261, 527, 845
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	56, 214, 306, 325, 360, 477, 562, 739, 865
SfaNI	GCATC	3 cut(s)	91, 244, 620
Sse9I	AATT	4 cut(s)	115, 361, 411, 592
SsiI	CCGC	2 cut(s)	165, 237
SspI	AATATT	2 cut(s)	282, 382
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	4 cut(s)	230, 447, 514, 546
TasI	AATT	4 cut(s)	115, 361, 411, 592
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	249, 481, 599
Tru1I	TTAA	5 cut(s)	336, 354, 389, 534, 620
Tru9I	TTAA	5 cut(s)	336, 354, 389, 534, 620
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	2 cut(s)	393, 546
TseI	GCWGC	2 cut(s)	7, 51
Tsp45I	GTSAC	2 cut(s)	393, 546
TspDTI	ATGAA	3 cut(s)	85, 423, 644
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	570
Van91I	CCANNNNNTGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	361, 592
XbaI	TCTAGA	1 cut(s)	122
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.