Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

16419084 .. 16439467

Gene Structure 20384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG187100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGGGAGAGAGATCAAGAGGTAGTGGCAGAGGAAGGGGCTGTCGTGGCGGCGGCTTTGGCAAAGATAGAGTTGATGCACTTGGTATATTATTGTAAGCGCTATGACATTCTCATGACACATATATTGCGCCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGACATTTGCTAATATTCCCTTGAGCTCACATATTGTTGATGAGATTAAGGAGGCTGTTAGAAAGGACAATAAGCAGCGTTTTAGCCTCTTGGAAGAAAATGGGAAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGTCAGGTCAGAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

7.02

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	39 - 118	1.3e-19	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 53, 163
AcsI	RAATTY	1 cut(s)	151
AfeI	AGCGCT	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	151, 211
AluBI	AGCT	2 cut(s)	202, 237
AluI	AGCT	2 cut(s)	202, 237
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	358
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	102, 132
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	3 cut(s)	51, 54, 287
BlsI	GCNGC	3 cut(s)	52, 55, 288
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	358
BsmBI	CGTCTC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	13, 190
BspACI	CCGC	3 cut(s)	50, 53, 163
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	136
BspHI	TCATGA	2 cut(s)	114, 187
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	13, 190
BssT1I	CCWWGG	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	102, 132
BstKTI	GATC	2 cut(s)	16, 193
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	13, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 59
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	342
CciI	TCATGA	2 cut(s)	114, 187
CfoI	GCGC	2 cut(s)	102, 132
CviAII	CATG	2 cut(s)	115, 188
CviJI	RGCY	8 cut(s)	41, 56, 140, 202, 237, 266, 297, 342
CviKI_1	RGCY	8 cut(s)	41, 56, 140, 202, 237, 266, 297, 342
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	15, 192
DpnII	GATC	2 cut(s)	13, 190
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	239
Eco47III	AGCGCT	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	118, 191
FatI	CATG	2 cut(s)	114, 187
FauNDI	CATATG	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	51, 54, 287
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	51, 54, 287
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	2 cut(s)	101, 131
GluI	GCNGC	3 cut(s)	51, 54, 287
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	102, 132
Hin1II	CATG	2 cut(s)	118, 191
Hin6I	GCGC	2 cut(s)	100, 130
HinP1I	GCGC	2 cut(s)	100, 130
Hpy188I	TCNGA	2 cut(s)	145, 363
Hpy188III	TCNNGA	3 cut(s)	17, 115, 188
HpyAV	CCTTC	2 cut(s)	29, 175
HpyCH4IV	ACGT	2 cut(s)	328, 353
HpyCH4V	TGCA	2 cut(s)	79, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 59
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	2 cut(s)	328, 353
Hsp92II	CATG	2 cut(s)	118, 191
HspAI	GCGC	2 cut(s)	100, 130
Kzo9I	GATC	2 cut(s)	13, 190
LpnPI	CCDG	1 cut(s)	342
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	2 cut(s)	328, 353
MalI	GATC	2 cut(s)	15, 192
MboI	GATC	2 cut(s)	13, 190
MboII	GAAGA	2 cut(s)	223, 317
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	4 cut(s)	13, 25, 256, 308
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	47, 59
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	2 cut(s)	13, 190
NlaIII	CATG	2 cut(s)	118, 191
PagI	TCATGA	2 cut(s)	114, 187
PkrI	GCNGC	3 cut(s)	52, 55, 288
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	51, 54, 287
Sau3AI	GATC	2 cut(s)	13, 190
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	7 cut(s)	24, 186, 204, 239, 331, 356, 361
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	50, 53, 163
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	370
SstI	GAGCTC	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	2 cut(s)	331, 356
TasI	AATT	1 cut(s)	151
TauI	GCSGC	2 cut(s)	53, 56
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	176
XapI	RAATTY	1 cut(s)	151
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.