Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

14431464 .. 14432265

Gene Structure 802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAAGCATTTGTCTTGATATCCTCAAAGCAAAATGGAGTCCAACCCTTACTATCTCTAAGGACACGTATATTGCGCCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGACATTTGCTAATATTCCCTTGAGCTCACATATTGTTGATGAGATTAAGGAGGCTGTTAGAAAGGATAATAAGCTGCGTTTTAGCCTCTTGGAAGAAAATGAGGAACTTTTGATATGTGCAAACCAAGGCCACTCAACAACGACAACTATCCTCGTTTATCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

108

Amino Acids

12.26

Weight (kDa)

6.05

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	23 - 100	1.9e-18	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	97, 157
AluBI	AGCT	3 cut(s)	148, 183, 232
AluI	AGCT	3 cut(s)	148, 183, 232
Alw21I	GWGCWC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	219
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	59, 90
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	78
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	86, 148, 183, 212, 232, 243, 288
CviKI_1	RGCY	7 cut(s)	86, 148, 183, 212, 232, 243, 288
DdeI	CTNAG	2 cut(s)	59, 90
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	137
FaiI	YATR	8 cut(s)	71, 81, 83, 107, 135, 189, 274, 325
FatI	CATG	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	233
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	16, 134
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	278, 323
HpyF3I	CTNAG	2 cut(s)	59, 90
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	219
MaeII	ACGT	1 cut(s)	67
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	169, 263
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	5 cut(s)	34, 202, 253, 254, 320
MseI	TTAA	1 cut(s)	204
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	70, 132, 150, 185, 234
SgeI	CNNG	8 cut(s)	28, 78, 146, 166, 190, 259, 296, 323
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	1 cut(s)	172
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	283
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	122
XapI	RAATTY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.