Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

20105654 .. 20109185

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G143900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCGGGGGTCTGTTACCATTAACAAAATTCCAGTTCTACGCTACTATCGTGTTTCCCTTCCACGTACCCCTAAATCTCATCCTCTTCTCCTTCCCACCTATCCTGCTCGGGTTCTCATGGACAACAATAGCAGCAGCAGCGGGTCTTCTTTTGCATCTTTTGCTCGTAACTCCAGAAGTGGTGGTAGAGGAGGAGATTGGGATGATAGAGAAAGATCAAGGGGCCGTGGTGGTGGTCGAGGGGGTGGCTCTGGCAAAGATAAAATTGACGCCCTTGGTAGATTGTTGACACGTATATTGCGCCATATGGCGGCTGAGTTGAATTTGAATATGCGAAGTGATGGATATGTGAAAGTTCAGGATCTGTTAAAGCTGAACATACAGACATTTGCTAATATTCCATTGAGATCACATACTGTTGATGAAATTGAGGAGGCTGTCAGAAAGGATAATAAGCAGCGCTTCGGCCTCTTGGAAGAAAATGGGGAGCTTTTGATACGTGCAAACCAAGGCCACACAACAATGATAGTTGAATCTGAAAGATTGTTGAAGCCCATCCTTACATCTGAAGAAGTTCCAGTGTGCGTGCATGGGACCTATCGGAAGAATTTGGAATCAATATTAGAGTCTGGTCTAAAGAGCATGAAACGATTGCATGTTCACTTCTCACGCGGCTTGCCAACTGATGGGCAAGTGATTAGTGGGATGAGACGGGATGTTAATGTTTTGATCTATCTCGATGTCAGAAAAGCTCTAGAAGAGGGAATGAAGTTTTACATTTCAGAGAACAAGGTAATTTTGACTGAAGGTTTTGATGGTGTTGTGCCAGTCAAGTACTTTGAGAAAATAGAATCGTGGCCCGATAGAAAGCCGATACTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

295

Amino Acids

33.16

Weight (kDa)

9.79

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccII	CGCG	1 cut(s)	672
AciI	CCGC	4 cut(s)	4, 141, 311, 672
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	27, 322, 607
AcuI	CTGAAG	2 cut(s)	588, 825
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	67, 836
AfeI	AGCGCT	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	310, 686
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	322, 328, 533, 550
AluBI	AGCT	3 cut(s)	373, 490, 752
AluI	AGCT	3 cut(s)	373, 490, 752
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	108
Aor51HI	AGCGCT	1 cut(s)	461
AoxI	GGCC	4 cut(s)	223, 466, 511, 857
ApeKI	GCWGC	4 cut(s)	132, 135, 138, 457
ApoI	RAATTY	3 cut(s)	27, 322, 607
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	303, 462
AspS9I	GGNCC	3 cut(s)	223, 594, 858
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	144, 147, 150, 469
BccI	CCATC	4 cut(s)	335, 563, 680, 809
BceAI	ACGGC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	1 cut(s)	755
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	6 cut(s)	133, 136, 139, 312, 458, 673
BlsI	GCNGC	6 cut(s)	134, 137, 140, 313, 459, 674
BmcAI	AGTACT	1 cut(s)	836
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	223, 594, 858
BmiI	GGNNCC	2 cut(s)	224, 595
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	157
BsaAI	YACGTR	3 cut(s)	65, 293, 500
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	226, 274, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 686
Bse1I	ACTGG	3 cut(s)	32, 578, 827
BseDI	CCNNGG	3 cut(s)	226, 274, 508
BseGI	GGATG	5 cut(s)	79, 208, 555, 711, 721
BseLI	CCNNNNNNNGG	2 cut(s)	310, 686
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	32, 578, 827
BseRI	GAGGAG	3 cut(s)	204, 207, 446
BseXI	GCAGC	4 cut(s)	144, 147, 150, 469
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	4 cut(s)	225, 468, 513, 859
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	310, 686
BsmAI	GTCTC	1 cut(s)	703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	4 cut(s)	225, 468, 513, 859
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	4 cut(s)	215, 361, 407, 729
BspACI	CCGC	4 cut(s)	4, 141, 311, 672
BspANI	GGCC	4 cut(s)	225, 468, 513, 859
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	224, 595
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	32, 578, 827
BssECI	CCNNGG	3 cut(s)	226, 274, 508
BssMI	GATC	4 cut(s)	215, 361, 407, 729
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	274, 508
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	90, 753
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstBAI	YACGTR	3 cut(s)	65, 293, 500
BstC8I	GCNNGC	2 cut(s)	587, 677
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	79, 208, 555, 711, 721
BstFNI	CGCG	1 cut(s)	672
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	2 cut(s)	303, 462
BstKTI	GATC	4 cut(s)	218, 364, 410, 732
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	4 cut(s)	215, 361, 407, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 161
BstNSI	RCATGY	1 cut(s)	659
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	4 cut(s)	144, 147, 150, 469
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	225, 468, 513, 859
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	79, 208, 555, 711, 721
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	587, 677
CaiI	CAGNNNCTG	1 cut(s)	364
CfoI	GCGC	2 cut(s)	303, 462
Cfr13I	GGNCC	3 cut(s)	223, 594, 858
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	66, 835
CviAII	CATG	4 cut(s)	118, 590, 643, 656
CviQI	GTAC	2 cut(s)	66, 835
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	4 cut(s)	217, 363, 409, 731
DpnII	GATC	4 cut(s)	215, 361, 407, 729
Eam1104I	CTCTTC	2 cut(s)	90, 753
EarI	CTCTTC	2 cut(s)	90, 753
Eco130I	CCWWGG	2 cut(s)	274, 508
Eco47I	GGWCC	1 cut(s)	594
Eco47III	AGCGCT	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	588, 825
Eco88I	CYCGRG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	274, 508
ErhI	CCWWGG	2 cut(s)	274, 508
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	4 cut(s)	121, 593, 646, 659
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	4 cut(s)	117, 589, 642, 655
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	306
Fnu4HI	GCNGC	6 cut(s)	133, 136, 139, 312, 458, 673
FokI	GGATG	5 cut(s)	66, 215, 542, 718, 728
Fsp4HI	GCNGC	6 cut(s)	133, 136, 139, 312, 458, 673
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	2 cut(s)	302, 461
GluI	GCNGC	6 cut(s)	133, 136, 139, 312, 458, 673
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	4 cut(s)	225, 468, 513, 859
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	303, 462
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	121, 593, 646, 659
Hin6I	GCGC	2 cut(s)	301, 460
HinP1I	GCGC	2 cut(s)	301, 460
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	4 cut(s)	533, 614, 626, 851
Hpy166II	GTNNAC	2 cut(s)	288, 661
Hpy188I	TCNGA	7 cut(s)	443, 538, 568, 603, 746, 784, 884
Hpy188III	TCNNGA	4 cut(s)	174, 359, 737, 755
Hpy8I	GTNNAC	2 cut(s)	288, 661
HpyAV	CCTTC	3 cut(s)	68, 101, 800
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	3 cut(s)	64, 292, 499
HpyCH4V	TGCA	4 cut(s)	155, 503, 589, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 161
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	3 cut(s)	64, 292, 499
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	121, 593, 646, 659
HspAI	GCGC	2 cut(s)	301, 460
Kzo9I	GATC	4 cut(s)	215, 361, 407, 729
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	45, 117, 187, 237, 344, 591, 615, 840
Lsp1109I	GCAGC	4 cut(s)	144, 147, 150, 469
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	3 cut(s)	64, 292, 499
MaeIII	GTNAC	2 cut(s)	13, 167
MalI	GATC	4 cut(s)	217, 363, 409, 731
MboI	GATC	4 cut(s)	215, 361, 407, 729
MboII	GAAGA	6 cut(s)	77, 138, 488, 581, 616, 770
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	6 cut(s)	27, 264, 322, 426, 607, 795
MlyI	GAGTC	1 cut(s)	635
MnlI	CCTC	8 cut(s)	93, 182, 185, 233, 424, 427, 479, 754
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	3 cut(s)	21, 368, 720
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	138, 161
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	4 cut(s)	215, 361, 407, 729
NlaIII	CATG	4 cut(s)	121, 593, 646, 659
NlaIV	GGNNCC	2 cut(s)	224, 595
NspI	RCATGY	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	533, 614, 851
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	6 cut(s)	134, 137, 140, 313, 459, 674
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	3 cut(s)	65, 293, 500
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	224, 595
PspPI	GGNCC	3 cut(s)	223, 594, 858
PspPPI	RGGWCCY	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	67, 836
RsaNI	GTAC	2 cut(s)	66, 835
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	21, 368, 720
SatI	GCNGC	6 cut(s)	133, 136, 139, 312, 458, 673
Sau3AI	GATC	4 cut(s)	215, 361, 407, 729
Sau96I	GGNCC	3 cut(s)	223, 594, 858
ScaI	AGTACT	1 cut(s)	836
SchI	GAGTC	1 cut(s)	635
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	27, 264, 322, 426, 607, 795
SsiI	CCGC	4 cut(s)	4, 141, 311, 672
SspI	AATATT	2 cut(s)	397, 621
SspMI	CTAG	1 cut(s)	755
StyI	CCWWGG	2 cut(s)	274, 508
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	3 cut(s)	67, 295, 502
TaqI	TCGA	2 cut(s)	238, 738
TasI	AATT	6 cut(s)	27, 264, 322, 426, 607, 795
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	2 cut(s)	314, 675
TfiI	GAWTC	3 cut(s)	533, 614, 851
Tru1I	TTAA	3 cut(s)	21, 368, 720
Tru9I	TTAA	3 cut(s)	21, 368, 720
TscAI	CASTG	1 cut(s)	585
TseI	GCWGC	4 cut(s)	132, 135, 138, 457
TspDTI	ATGAA	3 cut(s)	438, 659, 782
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	3 cut(s)	27, 322, 607
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	755
ZrmI	AGTACT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.