Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

42197006 .. 42199705

Gene Structure 2700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTGGGCGTCTGTCACCCATAGCCACCTTCAAATTCTACGCTACTGTCGTGCTTTCCTTCCACGTAGCCCTAAACCTCTCCCTCTTCTTTTCCTTCCCAGCCTAACGTTCATGGACAACAGAACCACCACCACCACCAGCAATTCCTTCGCTCCTTTTGCCCGTAACAACAGAAGTGGTGATGGTAGAGGAGGAGGCTGGGAGGTGAAAGATGAGGGAGAGAGATCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGTGGCTCTGGCAAAGATAGAGTTGATGCACTCGGTAGATTATTGACACGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGGGGGTTCGTGATATTTTAAAGCTGAACTTGAATACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATTAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGGTAGTTGAAACCGAAAGGTTATTAAAGCCAATCCTTTCATCTGAAGAAGTTCCAGTATGCGTGCATGGAACTTATAGGAAGAATTTGGATTCAATATTAGAGTCTGGTCTGAAGTGCATGACGAGATTGCATGTGCACTTTGCAAGTGGCTTGCCAACAGATGGGGACGTGATCAGCGGTATGAGACGGGATGTTAACATTTTGATCTTTCTTGATATCAGAAAAGCTTTAGCTGAGGGAATGAAGTTCTACATTTCAGACAACAAGGTGATCTTGACTGAAGGCTTTGATGGTGTTGTTCCAGTCAAGTACTTCGAGAAAATAGAATCGTGGCCTGGTAGAAAGCCCGTAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

301

Amino Acids

33.55

Weight (kDa)

9.61

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	97 - 277	3.4e-57	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccII	CGCG	1 cut(s)	237
AciI	CCGC	5 cut(s)	237, 240, 322, 355, 723
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	33, 343, 628
AcuI	CTGAAG	3 cut(s)	609, 677, 846
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	32, 343, 403, 554, 639
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	5 cut(s)	394, 429, 773, 779, 899
AluI	AGCT	5 cut(s)	394, 429, 773, 779, 899
Alw21I	GWGCWC	2 cut(s)	431, 684
Alw26I	GTCTC	1 cut(s)	724
Alw44I	GTGCAC	1 cut(s)	680
AoxI	GGCC	3 cut(s)	253, 532, 878
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	3 cut(s)	33, 343, 628
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	4 cut(s)	7, 191, 217, 826
BaeGI	GKGCMC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	431, 684
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	176, 356, 701, 830
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	724
BisI	GCNGC	3 cut(s)	238, 323, 479
BlsI	GCNGC	3 cut(s)	239, 324, 480
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	780
BsaAI	YACGTR	3 cut(s)	65, 314, 521
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	256, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	599, 848
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	256, 529
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMII	CTCAG	2 cut(s)	327, 771
BseNI	ACTGG	2 cut(s)	599, 848
BseRI	GAGGAG	3 cut(s)	204, 207, 258
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	2 cut(s)	98, 198
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	255, 534, 880
BsiHKAI	GWGCWC	2 cut(s)	431, 684
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	255, 534, 880
Bsp1286I	GDGCHC	2 cut(s)	431, 684
Bsp143I	GATC	4 cut(s)	224, 717, 750, 816
BspACI	CCGC	5 cut(s)	237, 240, 322, 355, 723
BspANI	GGCC	3 cut(s)	255, 534, 880
BspCNI	CTCAG	2 cut(s)	328, 772
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	599, 848
BssECI	CCNNGG	2 cut(s)	256, 529
BssMI	GATC	4 cut(s)	224, 717, 750, 816
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	3 cut(s)	47, 439, 547
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	3 cut(s)	65, 314, 521
BstC8I	GCNNGC	2 cut(s)	608, 698
BstDEI	CTNAG	2 cut(s)	336, 780
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	4 cut(s)	227, 720, 753, 819
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	4 cut(s)	224, 717, 750, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	880
BstSLI	GKGCMC	1 cut(s)	684
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	255, 534, 880
BtgI	CCRYGG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	608, 698
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	856
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	112, 611, 664, 677
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	2 cut(s)	336, 780
DpnI	GATC	4 cut(s)	226, 719, 752, 818
DpnII	GATC	4 cut(s)	224, 717, 750, 816
DraI	TTTAAA	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	763
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	3 cut(s)	609, 677, 846
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	880
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	4 cut(s)	115, 614, 667, 680
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 803, 835
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	4 cut(s)	111, 610, 663, 676
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	238, 323, 479
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	238, 323, 479
GluI	GCNGC	3 cut(s)	238, 323, 479
GsaI	CCCAGC	2 cut(s)	102, 202
HaeIII	GGCC	3 cut(s)	255, 534, 880
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	115, 614, 667, 680
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	3 cut(s)	635, 647, 872
HpaI	GTTAAC	1 cut(s)	742
HphI	GGTGA	4 cut(s)	7, 191, 217, 826
Hpy166II	GTNNAC	2 cut(s)	682, 742
Hpy188I	TCNGA	6 cut(s)	337, 464, 589, 657, 767, 805
Hpy188III	TCNNGA	5 cut(s)	228, 380, 758, 820, 862
Hpy8I	GTNNAC	2 cut(s)	682, 742
HpyAV	CCTTC	6 cut(s)	38, 68, 104, 157, 459, 821
HpyCH4III	ACNGT	3 cut(s)	47, 439, 547
HpyCH4IV	ACGT	5 cut(s)	64, 107, 313, 520, 714
HpyCH4V	TGCA	7 cut(s)	293, 524, 610, 663, 676, 682, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	336, 780
HpySE526I	ACGT	5 cut(s)	64, 107, 313, 520, 714
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	115, 614, 667, 680
Ksp22I	TGATCA	1 cut(s)	717
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	224, 717, 750, 816
LmnI	GCTCC	2 cut(s)	157, 245
LpnPI	CCDG	9 cut(s)	112, 151, 184, 258, 612, 636, 861, 867, 894
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	5 cut(s)	64, 107, 313, 520, 714
MaeIII	GTNAC	2 cut(s)	13, 164
MalI	GATC	4 cut(s)	226, 719, 752, 818
MboI	GATC	4 cut(s)	224, 717, 750, 816
MboII	GAAGA	4 cut(s)	77, 509, 602, 637
MhlI	GDGCHC	2 cut(s)	431, 684
MluCI	AATT	4 cut(s)	33, 142, 343, 628
MlyI	GAGTC	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	4 cut(s)	389, 450, 569, 741
MspA1I	CMGCKG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	4 cut(s)	224, 717, 750, 816
NlaIII	CATG	4 cut(s)	115, 614, 667, 680
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	635, 872
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	239, 324, 480
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
Ppu21I	YACGTR	3 cut(s)	65, 314, 521
Psp124BI	GAGCTC	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	880
PspFI	CCCAGC	2 cut(s)	98, 198
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	4 cut(s)	389, 450, 569, 741
SatI	GCNGC	3 cut(s)	238, 323, 479
Sau3AI	GATC	4 cut(s)	224, 717, 750, 816
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	2 cut(s)	431, 684
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	33, 142, 343, 628
SsiI	CCGC	5 cut(s)	237, 240, 322, 355, 723
SspI	AATATT	2 cut(s)	418, 642
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	3 cut(s)	47, 439, 547
TaiI	ACGT	5 cut(s)	67, 110, 316, 523, 717
TaqI	TCGA	2 cut(s)	227, 861
TasI	AATT	4 cut(s)	33, 142, 343, 628
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	2 cut(s)	240, 325
TfiI	GAWTC	2 cut(s)	635, 872
Tru1I	TTAA	4 cut(s)	389, 450, 569, 741
Tru9I	TTAA	4 cut(s)	389, 450, 569, 741
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	100, 573, 803
Van91I	CCANNNNNTGG	1 cut(s)	707
VneI	GTGCAC	1 cut(s)	680
XapI	RAATTY	3 cut(s)	33, 343, 628
XceI	RCATGY	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.