Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

51231750 .. 51232887

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAAGCATTTGTCTTGATATCCTCAAAGAAAAATGGAGTCCAGCCCCTTACTATCTCTAAGGACATGTATATTGTGCCATATGGCTTCGAGTTGAATTTGGACATGTGGAGTGATGGATTTCTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGACATTTGCTAATATTCCCTTGAGCTCACATATTGTTGATGACATTAAGGAGGCTGTTAGAAAGGATAATAAGCAGCATTTTAGCCTCTTGGAAGAAAATGAGAAACTTTTGATACATGCAAACCAAGGCCACACAACAACGGCAACTATCCTCATTTATCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

108

Amino Acids

12.3

Weight (kDa)

5.64

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	32 - 99	2.7e-11	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	146
AflIII	ACRYGT	2 cut(s)	66, 105
AgsI	TTSAA	2 cut(s)	97, 157
AluBI	AGCT	2 cut(s)	148, 183
AluI	AGCT	2 cut(s)	148, 183
Alw21I	GWGCWC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	315
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstNSI	RCATGY	3 cut(s)	70, 109, 278
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	133
CviAII	CATG	4 cut(s)	67, 106, 134, 275
CviJI	RGCY	7 cut(s)	46, 87, 148, 183, 212, 243, 288
CviKI_1	RGCY	7 cut(s)	46, 87, 148, 183, 212, 243, 288
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	4 cut(s)	70, 109, 137, 278
FaiI	YATR	9 cut(s)	68, 72, 82, 84, 107, 135, 189, 276, 325
FatI	CATG	4 cut(s)	66, 105, 133, 274
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	70, 109, 137, 278
HinfI	GANTC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	16, 134
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	278, 323
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	70, 109, 137, 278
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	244
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	169, 263
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	34, 202, 254, 320
MseI	TTAA	1 cut(s)	204
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	70, 109, 137, 278
NspI	RCATGY	3 cut(s)	70, 109, 278
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	2 cut(s)	66, 105
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	2 cut(s)	66, 105
Psp124BI	GAGCTC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	3 cut(s)	132, 150, 185
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	97
SspI	AATATT	1 cut(s)	172
SstI	GAGCTC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	283
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	122
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	3 cut(s)	70, 109, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.