Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

42904198 .. 42907761

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG220100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGGGCGTCTGTCACCCATAGCCACCTTCAAATTCTACGCTACTGTCGTGCTTTCCTTCCACGTAGCCCTAAACCTCTCCATCTTCTTTTCCTTCCCAGCCTAACGTTCATGGACAACAGAACCACCACCACCAGCAATTCCTTCGCTCCTTTTGCCCGTAATAACAGAAGTGGTGATGGTAGAGAAGGAGGCTGGGAGGTGAAAGATGAGGGAGAGAGATCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGCTCTGGCAAAGATAGAGTTGACGCACTCGGTAGATTATTGACATGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAGGGTTCATGATATTTTAAAGCTGAACTTGAAGACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATCAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGGTAACTATCCTTGTTTATCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

188

Amino Acids

21.04

Weight (kDa)

10.08

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	95 - 181	6.5e-22	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	234, 237, 316, 349
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	33, 337
AcyI	GRCGYC	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	32, 337, 397
AluBI	AGCT	2 cut(s)	388, 423
AluI	AGCT	2 cut(s)	388, 423
Alw21I	GWGCWC	1 cut(s)	425
AoxI	GGCC	2 cut(s)	250, 526
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	2 cut(s)	33, 337
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	7, 188, 214
BanII	GRGCYC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	90, 173, 350
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BisI	GCNGC	3 cut(s)	235, 317, 473
BlsI	GCNGC	3 cut(s)	236, 318, 474
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	404
BsaAI	YACGTR	2 cut(s)	65, 515
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	253, 523
BseDI	CCNNGG	2 cut(s)	253, 523
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	2 cut(s)	98, 195
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	252, 528
BsiHKAI	GWGCWC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	252, 528
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	221, 441
BspACI	CCGC	4 cut(s)	234, 237, 316, 349
BspANI	GGCC	2 cut(s)	252, 528
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	253, 523
BssMI	GATC	2 cut(s)	221, 441
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	523
Bst4CI	ACNGT	3 cut(s)	47, 433, 541
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	2 cut(s)	65, 515
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	2 cut(s)	224, 444
BstMBI	GATC	2 cut(s)	221, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	309
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	252, 528
BtgI	CCRYGG	1 cut(s)	253
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	293
CviAII	CATG	3 cut(s)	112, 306, 374
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	223, 443
DpnII	GATC	2 cut(s)	221, 441
DraI	TTTAAA	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	3 cut(s)	115, 309, 377
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	3 cut(s)	111, 305, 373
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	235, 317, 473
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	3 cut(s)	235, 317, 473
GluI	GCNGC	3 cut(s)	235, 317, 473
GsaI	CCCAGC	2 cut(s)	102, 199
HaeIII	GGCC	2 cut(s)	252, 528
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	115, 309, 377
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HphI	GGTGA	3 cut(s)	7, 188, 214
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	331, 458
Hpy188III	TCNNGA	2 cut(s)	225, 374
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	6 cut(s)	38, 68, 104, 154, 182, 453
HpyCH4III	ACNGT	3 cut(s)	47, 433, 541
HpyCH4IV	ACGT	3 cut(s)	64, 107, 514
HpyCH4V	TGCA	2 cut(s)	518, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	3 cut(s)	64, 107, 514
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	115, 309, 377
Kzo9I	GATC	2 cut(s)	221, 441
LmnI	GCTCC	2 cut(s)	154, 242
LpnPI	CCDG	4 cut(s)	112, 148, 181, 252
Lsp1109I	GCAGC	1 cut(s)	484
MaeII	ACGT	3 cut(s)	64, 107, 514
MaeIII	GTNAC	2 cut(s)	13, 541
MalI	GATC	2 cut(s)	223, 443
MboI	GATC	2 cut(s)	221, 441
MboII	GAAGA	3 cut(s)	77, 409, 503
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	33, 139, 337
MnlI	CCTC	9 cut(s)	87, 185, 193, 205, 221, 233, 360, 442, 494
MseI	TTAA	1 cut(s)	383
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	2 cut(s)	221, 441
NlaIII	CATG	3 cut(s)	115, 309, 377
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	373
PciI	ACATGT	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PkrI	GCNGC	3 cut(s)	236, 318, 474
Ppu21I	YACGTR	2 cut(s)	65, 515
PscI	ACATGT	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	107
PspFI	CCCAGC	2 cut(s)	98, 195
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	235, 317, 473
Sau3AI	GATC	2 cut(s)	221, 441
Sau96I	GGNCC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	9 cut(s)	30, 67, 79, 110, 204, 232, 390, 425, 517
Sse9I	AATT	3 cut(s)	33, 139, 337
SsiI	CCGC	4 cut(s)	234, 237, 316, 349
SspI	AATATT	1 cut(s)	412
SstI	GAGCTC	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	47, 433, 541
TaiI	ACGT	3 cut(s)	67, 110, 517
TaqI	TCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	33, 139, 337
TauI	GCSGC	2 cut(s)	237, 319
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	100, 362
XapI	RAATTY	2 cut(s)	33, 337
XceI	RCATGY	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.