Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

45116151 .. 45120777

Gene Structure 4627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGGGCGTCTGTCACCCATAGCCACCTTCAAATTCTACGCTACTGTCGTGCTTTCCTTCCACGTAGCCCTAAACCTCTCCCTCTTCTTTTCCTTCCCAGCCTAACGTTCATGGACAACAGAACCACCACCACCACCAGCAATTCCTTCGCTCCTTTTGCCCGTAATAACACGAGAGGAGGAGGCTGGGAGGTGAAAGATGAGGGAGAGAGATCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGCTCTGGCAAAGATAGAGTTGATGCACTCGGTAGATTATTGACACGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAGGGTTCATGATATTTTAAAGCTGAACTTGAAGACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATCAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGATAGTTGAAACTGAAAGATTATTAAAGCCAATCCTTTCATTTGAAGAAGTTCCAGTATGTGTGCATGGAACTTATAGGAAGAATTTGGATTCAATATTAGAGTCTGGTCTGAAGTGCATGACAAGATTGCATGTACACTTTGCAAGTGGCTTGCCAACAGATGGGGAAGTGATCAGCGGTATGAGACGGGATGTTAACATTTTGATCTTTCTTGATATCAGAAAAGCTTTAGCTGGTGCCTCATGCCTAAGTTCGTTTTATGTTACATTTCAGAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

270

Amino Acids

30.27

Weight (kDa)

9.8

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	92 - 255	2.1e-48	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	767
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccII	CGCG	1 cut(s)	225
AciI	CCGC	5 cut(s)	225, 228, 307, 340, 708
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	33, 328, 613
AcuI	CTGAAG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	32, 328, 388, 539, 575, 624
AluBI	AGCT	4 cut(s)	379, 414, 758, 764
AluI	AGCT	4 cut(s)	379, 414, 758, 764
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	709
AoxI	GGCC	2 cut(s)	241, 517
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	3 cut(s)	33, 328, 613
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	7, 205
BanI	GGYRCC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	416
BauI	CACGAG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	341, 686
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BclI	TGATCA	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	709
BisI	GCNGC	3 cut(s)	226, 308, 464
BlsI	GCNGC	3 cut(s)	227, 309, 465
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	242, 769
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	395
BsaAI	YACGTR	3 cut(s)	65, 299, 506
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	244, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	244, 514
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	3 cut(s)	192, 195, 246
BseXI	GCAGC	1 cut(s)	475
BseYI	CCCAGC	2 cut(s)	98, 186
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	243, 519
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	709
BsmBI	CGTCTC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	243, 519
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	212, 432, 702, 735
BspACI	CCGC	5 cut(s)	225, 228, 307, 340, 708
BspANI	GGCC	2 cut(s)	243, 519
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	242, 769
BspT107I	GGYRCC	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	244, 514
BssMI	GATC	4 cut(s)	212, 432, 702, 735
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	514
Bst2BI	CACGAG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	47, 424
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	664
BstBAI	YACGTR	3 cut(s)	65, 299, 506
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	321, 779
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	4 cut(s)	215, 435, 705, 738
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	4 cut(s)	212, 432, 702, 735
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	665
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	243, 519
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	683
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	6 cut(s)	112, 365, 596, 649, 662, 774
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	2 cut(s)	321, 779
DpnI	GATC	4 cut(s)	214, 434, 704, 737
DpnII	GATC	4 cut(s)	212, 432, 702, 735
DraI	TTTAAA	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	748
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	6 cut(s)	115, 368, 599, 652, 665, 777
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	6 cut(s)	111, 364, 595, 648, 661, 773
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	226, 308, 464
FokI	GGATG	1 cut(s)	734
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	226, 308, 464
GluI	GCNGC	3 cut(s)	226, 308, 464
GsaI	CCCAGC	2 cut(s)	102, 190
HaeIII	GGCC	2 cut(s)	243, 519
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	115, 368, 599, 652, 665, 777
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	620, 632
HpaI	GTTAAC	1 cut(s)	727
HphI	GGTGA	2 cut(s)	7, 205
Hpy166II	GTNNAC	2 cut(s)	667, 727
Hpy188I	TCNGA	5 cut(s)	322, 449, 642, 752, 804
Hpy188III	TCNNGA	3 cut(s)	216, 365, 743
Hpy8I	GTNNAC	2 cut(s)	667, 727
HpyAV	CCTTC	5 cut(s)	38, 68, 104, 157, 444
HpyCH4III	ACNGT	2 cut(s)	47, 424
HpyCH4IV	ACGT	4 cut(s)	64, 107, 298, 505
HpyCH4V	TGCA	6 cut(s)	278, 509, 595, 648, 661, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	321, 779
HpySE526I	ACGT	4 cut(s)	64, 107, 298, 505
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	115, 368, 599, 652, 665, 777
Ksp22I	TGATCA	1 cut(s)	702
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	212, 432, 702, 735
LmnI	GCTCC	2 cut(s)	157, 233
LpnPI	CCDG	7 cut(s)	112, 151, 172, 243, 597, 621, 750
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	4 cut(s)	64, 107, 298, 505
MaeIII	GTNAC	2 cut(s)	13, 793
MalI	GATC	4 cut(s)	214, 434, 704, 737
MboI	GATC	4 cut(s)	212, 432, 702, 735
MboII	GAAGA	5 cut(s)	77, 400, 494, 587, 622
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	4 cut(s)	33, 142, 328, 613
MlyI	GAGTC	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	374, 554, 726
MspA1I	CMGCKG	1 cut(s)	708
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	4 cut(s)	212, 432, 702, 735
NlaIII	CATG	6 cut(s)	115, 368, 599, 652, 665, 777
NlaIV	GGNNCC	2 cut(s)	242, 769
NmuCI	GTSAC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	665
PagI	TCATGA	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	227, 309, 465
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	3 cut(s)	65, 299, 506
Psp124BI	GAGCTC	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	107
PspFI	CCCAGC	2 cut(s)	98, 186
PspN4I	GGNNCC	2 cut(s)	242, 769
PspPI	GGNCC	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	374, 554, 726
SatI	GCNGC	3 cut(s)	226, 308, 464
Sau3AI	GATC	4 cut(s)	212, 432, 702, 735
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	33, 142, 328, 613
SsiI	CCGC	5 cut(s)	225, 228, 307, 340, 708
SspI	AATATT	2 cut(s)	403, 627
SstI	GAGCTC	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	47, 424
TaiI	ACGT	4 cut(s)	67, 110, 301, 508
TaqI	TCGA	1 cut(s)	215
TasI	AATT	4 cut(s)	33, 142, 328, 613
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	2 cut(s)	228, 310
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	3 cut(s)	374, 554, 726
Tru9I	TTAA	3 cut(s)	374, 554, 726
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	100, 353, 558
Van91I	CCANNNNNTGG	1 cut(s)	692
XapI	RAATTY	3 cut(s)	33, 328, 613
XceI	RCATGY	1 cut(s)	665
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.