Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000855.1

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

36960 .. 39930

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000855.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgctatcaccgccacctctagatacctccacgattgaagagctccaatgtcgcccgtcctgtgaccacggaaagatgagtcgtgagtcgcgcacgcgattgggaagaggaggaggttgggtgttaaaagatgagggtgggagatcaagaggtagagacagaggatggggctgtcgtggcggtggcgactgctctagcaaagatagagttgatgcatttggtatattattgacacatatattgcgccatatggcttctgagttgaattttgatatgcagagtgatggatttgtgaaggttcatgatcatttagagctaaacttgaagacatttgctaatattccattgagctcacatagtgttgatgaaaataaggaggttgtcagaaaggacaataagcaacgttttagcctcttggaagaaaatgggaaacttttgatacgtgcaaaccaaggccactcaacaacggacttcatccccgacaaaatgatcctccaaattcgcccaatcccacttcgacgtcttggtacctgtaatgggctccagcttccggtgaaagacgtttctctcataaagaagaccggcaaaaggtgggcaagaggggcggcggttggtgaagttggttggaggagggctctgattgggattgggggcggtaactgtcatcgggatgagctggcgttcgaggctgaaatcagaattctcgacaaggacgtaggagcggaggaggctggggcagaagacggcgagcttgtggagggagggccagccaccgaaaggctcgaaggaggcagcagagacaagatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

269

Amino Acids

29.64

Weight (kDa)

7.68

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	523
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	722
AccII	CGCG	2 cut(s)	91, 97
AciI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
AclI	AACGTT	1 cut(s)	403
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	3 cut(s)	265, 498, 699
AcyI	GRCGYC	1 cut(s)	520
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
AgsI	TTSAA	3 cut(s)	38, 265, 325
AluBI	AGCT	6 cut(s)	43, 316, 351, 547, 676, 751
AluI	AGCT	6 cut(s)	43, 316, 351, 547, 676, 751
Alw21I	GWGCWC	2 cut(s)	45, 353
Alw26I	GTCTC	2 cut(s)	150, 792
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	454, 764
ApeKI	GCWGC	1 cut(s)	792
ApoI	RAATTY	3 cut(s)	265, 498, 699
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	93, 246
AspS9I	GGNCC	1 cut(s)	764
AsuHPI	GGTGA	2 cut(s)	565, 626
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	4 cut(s)	45, 353, 543, 637
BbsI	GAAGAC	3 cut(s)	332, 584, 747
Bbv12I	GWGCWC	2 cut(s)	45, 353
BbvI	GCAGC	1 cut(s)	804
BccI	CCATC	2 cut(s)	159, 278
BceAI	ACGGC	1 cut(s)	760
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	150, 792
BfaI	CTAG	2 cut(s)	20, 195
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	2 cut(s)	606, 793
BlsI	GCNGC	2 cut(s)	607, 794
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	2 cut(s)	529, 542
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	3 cut(s)	332, 584, 747
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	67, 451
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
Bse118I	RCCGGY	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	67, 451
BseGI	GGATG	3 cut(s)	170, 474, 676
BseLI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	4 cut(s)	123, 126, 643, 740
BseXI	GCAGC	1 cut(s)	804
BseYI	CCCAGC	1 cut(s)	731
Bsh1236I	CGCG	2 cut(s)	91, 97
BshFI	GGCC	2 cut(s)	456, 766
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	45, 353
BsiSI	CCGG	2 cut(s)	551, 582
BslI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
BsmAI	GTCTC	2 cut(s)	150, 792
BsnI	GGCC	2 cut(s)	456, 766
Bsp1286I	GDGCHC	4 cut(s)	45, 353, 543, 637
Bsp143I	GATC	4 cut(s)	143, 304, 489, 804
BspACI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
BspANI	GGCC	2 cut(s)	456, 766
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	91, 97
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	529, 542
BspPI	GGATC	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	67, 451
BssMI	GATC	4 cut(s)	143, 304, 489, 804
BssNI	GRCGYC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	33, 100
BstACI	GRCGYC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	95, 678, 749, 768
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	170, 474, 676
BstFNI	CGCG	2 cut(s)	91, 97
BstHHI	GCGC	2 cut(s)	93, 246
BstKTI	GATC	4 cut(s)	146, 307, 492, 807
BstMAI	GTCTC	2 cut(s)	150, 792
BstMBI	GATC	4 cut(s)	143, 304, 489, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
BstUI	CGCG	2 cut(s)	91, 97
BstV1I	GCAGC	1 cut(s)	804
BstV2I	GAAGAC	3 cut(s)	332, 584, 747
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	456, 766
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	170, 474, 676
Cac8I	GCNNGC	4 cut(s)	95, 678, 749, 768
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	2 cut(s)	93, 246
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	1 cut(s)	302
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	145, 306, 491, 806
DpnII	GATC	4 cut(s)	143, 304, 489, 804
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	33, 100
EarI	CTCTTC	2 cut(s)	33, 100
Ecl136II	GAGCTC	2 cut(s)	43, 351
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	4 cut(s)	45, 353, 543, 637
Eco53kI	GAGCTC	2 cut(s)	43, 351
EcoICRI	GAGCTC	2 cut(s)	43, 351
EcoRI	GAATTC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	4 cut(s)	45, 353, 543, 637
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	305
FaiI	YATR	9 cut(s)	224, 237, 239, 249, 251, 275, 303, 357, 572
FatI	CATG	1 cut(s)	301
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	606, 793
FokI	GGATG	3 cut(s)	177, 461, 683
FriOI	GRGCYC	4 cut(s)	45, 353, 543, 637
Fsp4HI	GCNGC	2 cut(s)	606, 793
FspBI	CTAG	2 cut(s)	20, 195
GlaI	GCGC	2 cut(s)	92, 245
GluI	GCNGC	2 cut(s)	606, 793
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	456, 766
HapII	CCGG	2 cut(s)	551, 582
HhaI	GCGC	2 cut(s)	93, 246
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	2 cut(s)	91, 244
HinP1I	GCGC	2 cut(s)	91, 244
HinfI	GANTC	2 cut(s)	79, 86
HpaII	CCGG	2 cut(s)	551, 582
HphI	GGTGA	2 cut(s)	565, 626
Hpy188I	TCNGA	5 cut(s)	259, 386, 639, 698, 809
Hpy188III	TCNNGA	6 cut(s)	20, 83, 147, 302, 668, 704
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	289, 779
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	5 cut(s)	403, 442, 520, 561, 714
HpyCH4V	TGCA	3 cut(s)	215, 277, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	5 cut(s)	403, 442, 520, 561, 714
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	91, 244
KpnI	GGTACC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	143, 304, 489, 804
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	48, 546, 719
LpnPI	CCDG	8 cut(s)	73, 544, 557, 564, 595, 662, 717, 780
Lsp1109I	GCAGC	1 cut(s)	804
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	20, 195
MaeII	ACGT	5 cut(s)	403, 442, 520, 561, 714
MaeIII	GTNAC	2 cut(s)	62, 656
MalI	GATC	4 cut(s)	145, 306, 491, 806
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	4 cut(s)	143, 304, 489, 804
MboII	GAAGA	6 cut(s)	50, 117, 337, 431, 589, 752
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	4 cut(s)	45, 353, 543, 637
MluCI	AATT	3 cut(s)	265, 498, 699
MlyI	GAGTC	2 cut(s)	88, 95
MmeI	TCCRAC	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	2 cut(s)	551, 582
MvnI	CGCG	2 cut(s)	91, 97
MwoI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	143, 304, 489, 804
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	529, 542
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	217
PagI	TCATGA	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	607, 794
PleI	GAGTC	2 cut(s)	87, 94
PpsI	GAGTC	2 cut(s)	87, 94
Ppu21I	YACGTR	1 cut(s)	443
Psp124BI	GAGCTC	2 cut(s)	45, 353
Psp1406I	AACGTT	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	529, 542
PspPI	GGNCC	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	804
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	45, 353
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	606, 793
Sau3AI	GATC	4 cut(s)	143, 304, 489, 804
Sau96I	GGNCC	1 cut(s)	764
SchI	GAGTC	2 cut(s)	88, 95
SduI	GDGCHC	4 cut(s)	45, 353, 543, 637
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	3 cut(s)	265, 498, 699
SsiI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	20, 195
SstI	GAGCTC	2 cut(s)	45, 353
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	5 cut(s)	406, 445, 523, 564, 717
TaqI	TCGA	4 cut(s)	517, 684, 705, 783
TasI	AATT	3 cut(s)	265, 498, 699
TauI	GCSGC	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	792
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	290, 381, 463
TspGWI	ACGGA	2 cut(s)	84, 482
XapI	RAATTY	3 cut(s)	265, 498, 699
XbaI	TCTAGA	1 cut(s)	19
XspI	CTAG	2 cut(s)	20, 195
ZraI	GACGTC	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.