Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

29336910 .. 29342063

Gene Structure 5154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCCCGTCTCCGCTCTCGCCAAGTACAAGCTCGTCTTCCTGGGCGACCAGTCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAGTTCGACAACACCTATCAGGCTACCATCGGCATTGATTTTCTGTCAAAGACAATGTACCTTGAAGATCGAACCGTTCGATTGCAGCTCTGGGACACTGCTGGGCAGGAAAGATTCAGGAGTCTGATTCCAAGTTATATCCGGGATTCCTCTGTGGCTGTCATTGTATATGATGTTGCAAGCAGGCAGTCGTTCCTAAACACTTCCAAATGGATTGAAGAGGTTCGCACTGAGCGGGGAAGTGATGTTATCATTGTACTTGTTGGAAACAAAACAGATCTTGTAGATAAAAGGCAAGTTTCGATAGAGGAAGGAGAAGCCAAAGCTCGCGACCTAAATGTTATGTTCATTGAAACCAGTGCCAAGGCTGGCTTCAATATCAAGGCTCTCTTTCGGAAGATTGCGGCAGCCCTACCTGGAATGGAGACACTTTCTTCTACAAAGCAAGAGGATATGGTTGATGTAAACCTCAAGTCCTCCAATCCAAATGCATCACAGTCACAGGGACAGTCAGGAGGCTGTGCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

208

Amino Acids

23.09

Weight (kDa)

7.67

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 167	4.7e-15	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.1e-58	Ras family
Roc	PF08477	11 - 125	1.4e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	6.4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccBSI	CCGCTC	2 cut(s)	17, 331
AccII	CGCG	1 cut(s)	426
AciI	CCGC	3 cut(s)	15, 331, 500
AfaI	GTAC	4 cut(s)	29, 92, 155, 354
AgsI	TTSAA	4 cut(s)	161, 314, 449, 472
AjnI	CCWGG	2 cut(s)	42, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	3 cut(s)	34, 184, 422
AluI	AGCT	3 cut(s)	34, 184, 422
Alw26I	GTCTC	2 cut(s)	16, 515
ApeKI	GCWGC	2 cut(s)	181, 503
Asp700I	GAANNNNTTC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	193, 515
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	44, 513
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	16, 515
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	182, 501, 504
BlsI	GCNGC	3 cut(s)	183, 502, 505
Bme1390I	CCNGG	3 cut(s)	44, 239, 513
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	44, 239, 513
BmsI	GCATC	2 cut(s)	81, 596
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	43, 459
Bse1I	ACTGG	2 cut(s)	52, 453
BseBI	CCWGG	2 cut(s)	44, 513
BseDI	CCNNGG	2 cut(s)	43, 459
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	52, 453
BseXI	GCAGC	2 cut(s)	193, 515
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	203, 615
BsmAI	GTCTC	2 cut(s)	16, 515
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	203, 615
Bsp143I	GATC	2 cut(s)	163, 373
Bsp68I	TCGCGA	1 cut(s)	426
BspACI	CCGC	3 cut(s)	15, 331, 500
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	6
BsrBI	CCGCTC	2 cut(s)	17, 331
BsrI	ACTGG	2 cut(s)	52, 453
BssECI	CCNNGG	2 cut(s)	43, 459
BssMI	GATC	2 cut(s)	163, 373
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	44, 513
Bst4CI	ACNGT	3 cut(s)	172, 594, 606
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	277, 281, 424, 466
BstDEI	CTNAG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	166, 376
BstMAI	GTCTC	2 cut(s)	16, 515
BstMBI	GATC	2 cut(s)	163, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	44, 513
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	3 cut(s)	42, 237, 511
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	193, 515
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	3 cut(s)	192, 324, 460
BtuMI	TCGCGA	1 cut(s)	426
Cac8I	GCNNGC	4 cut(s)	277, 281, 424, 466
Csp6I	GTAC	4 cut(s)	28, 91, 154, 353
CviAII	CATG	2 cut(s)	88, 621
CviQI	GTAC	4 cut(s)	28, 91, 154, 353
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	165, 375
DpnII	GATC	2 cut(s)	163, 373
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	42, 511
EcoT14I	CCWWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	91, 624
FaiI	YATR	7 cut(s)	89, 234, 265, 267, 440, 551, 622
FalI	AAGNNNNNCTT	6 cut(s)	23, 55, 452, 484, 470, 502
FaqI	GGGAC	2 cut(s)	203, 615
FatI	CATG	2 cut(s)	87, 620
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	182, 501, 504
Fsp4HI	GCNGC	3 cut(s)	182, 501, 504
GluI	GCNGC	3 cut(s)	182, 501, 504
GsaI	CCCAGC	1 cut(s)	201
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	2 cut(s)	91, 624
HinfI	GANTC	4 cut(s)	210, 217, 223, 242
HpaII	CCGG	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	222, 492
Hpy188III	TCNNGA	3 cut(s)	214, 425, 609
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	172, 594, 606
HpyCH4V	TGCA	4 cut(s)	181, 275, 587, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	91, 624
Kzo9I	GATC	2 cut(s)	163, 373
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	193, 515
LweI	GCATC	2 cut(s)	81, 596
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	2 cut(s)	165, 375
MbiI	CCGCTC	2 cut(s)	17, 331
MboI	GATC	2 cut(s)	163, 373
MboII	GAAGA	5 cut(s)	31, 173, 326, 505, 522
MflI	RGATCY	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	7 cut(s)	256, 310, 397, 538, 575, 583, 605
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	1 cut(s)	318
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	3 cut(s)	44, 239, 513
MvaI	CCWGG	2 cut(s)	44, 513
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	163, 373
NlaIII	CATG	2 cut(s)	91, 624
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	594
NruI	TCGCGA	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 172
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	210, 223, 242
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	183, 502, 505
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	42, 511
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	42, 511
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PsuI	RGATCY	1 cut(s)	373
RruI	TCGCGA	1 cut(s)	426
RsaI	GTAC	4 cut(s)	29, 92, 155, 354
RsaNI	GTAC	4 cut(s)	28, 91, 154, 353
SatI	GCNGC	3 cut(s)	182, 501, 504
Sau3AI	GATC	2 cut(s)	163, 373
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	3 cut(s)	44, 239, 513
SetI	ASST	9 cut(s)	36, 113, 159, 186, 321, 424, 432, 514, 567
SfaNI	GCATC	2 cut(s)	81, 596
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SsiI	CCGC	3 cut(s)	15, 331, 500
StyD4I	CCNGG	3 cut(s)	42, 237, 511
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	172, 594, 606
TaqI	TCGA	4 cut(s)	102, 166, 175, 398
TatI	WGTACW	2 cut(s)	27, 352
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	3 cut(s)	210, 223, 242
TscAI	CASTG	3 cut(s)	199, 331, 460
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	2 cut(s)	181, 503
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	2 cut(s)	76, 433
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	3 cut(s)	199, 331, 460
XceI	RCATGY	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.