Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

25838234 .. 25841289

Gene Structure 3056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATATTGTACTATTCTGTCACCCATAGCCACCTTCAAATTCTACGCTACTGTCGTGCTTTCCTTCCACGTAGCCCTAAACCTCTCCCTCTTCTTTCCCTTCCCAGCCTAACGTTCATGGACAACAGAACCACCACCACCAGCAATTCCTTCGCTCCTTTTGCCCGTAATAACAGAAGTGGTGAAGGTAGAGGAGGAGGCTGGGAGGTGAAAGATGAGGGAGAGAGATCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGCTCTGGCAAAGATAGAGTCGATGCACTCGGTAGATTATTGACACGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAGGGTTCATGATATTTTAAAGCTGAACTTGAAGACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATCAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGATAGTGGGGAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGATAGTTGAAACTGAAAGATTATTAAAGCCAATCCTTTCATTTGAAGAAGTTCCAGTATGCGTGCATGGAACTTATAGGAAGAATTTGGATTCAATATCAGAGTCTGGTCTGAAGTGCATGACAAGATTGCATGTCCACTTTGCAAGTGGCTTGCCAACAGATGGGGAAGTGATCAGCGGTATGAGACGGAATGTTAACATTTTGATCTTCCTTGATATCAGAAAAGCTTTAGATGAGGGAATGAAGTTCTACATTTCAGACAACAAGGTGATCTTGACTGATGGCTTTGATGGTGTTGTTCCGGTCAAGTACTTCGAGAAAATAGAATCGTGGCCTGGTAGAAAGCCCATAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

301

Amino Acids

33.8

Weight (kDa)

9.62

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	97 - 277	1.9e-56	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccII	CGCG	1 cut(s)	240
AciI	CCGC	5 cut(s)	240, 243, 322, 355, 723
AclI	AACGTT	1 cut(s)	113
AcsI	RAATTY	3 cut(s)	39, 343, 628
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	2 cut(s)	11, 857
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	6 cut(s)	38, 343, 403, 554, 590, 639
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	4 cut(s)	394, 429, 773, 899
AluI	AGCT	4 cut(s)	394, 429, 773, 899
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	3 cut(s)	256, 532, 878
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	3 cut(s)	39, 343, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	4 cut(s)	13, 194, 220, 826
BanII	GRGCYC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	356, 701, 821, 830
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	724
BisI	GCNGC	3 cut(s)	241, 323, 479
BlsI	GCNGC	3 cut(s)	242, 324, 480
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	1 cut(s)	882
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	410
BsaAI	YACGTR	3 cut(s)	71, 314, 521
BsaJI	CCNNGG	2 cut(s)	259, 529
BsaWI	WCCGGW	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	259, 529
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	3 cut(s)	207, 210, 261
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	2 cut(s)	104, 201
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	258, 534, 880
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	848
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	724
BsmBI	CGTCTC	1 cut(s)	724
BsnI	GGCC	3 cut(s)	258, 534, 880
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	5 cut(s)	227, 447, 717, 750, 816
BspACI	CCGC	5 cut(s)	240, 243, 322, 355, 723
BspANI	GGCC	3 cut(s)	258, 534, 880
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	259, 529
BssMI	GATC	5 cut(s)	227, 447, 717, 750, 816
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	2 cut(s)	53, 439
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	3 cut(s)	71, 314, 521
BstC8I	GCNNGC	2 cut(s)	608, 698
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	5 cut(s)	230, 450, 720, 753, 819
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	5 cut(s)	227, 447, 717, 750, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	880
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	258, 534, 880
BtgI	CCRYGG	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	608, 698
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	10, 856
CviAII	CATG	5 cut(s)	118, 380, 611, 664, 677
CviQI	GTAC	2 cut(s)	10, 856
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	5 cut(s)	229, 449, 719, 752, 818
DpnII	GATC	5 cut(s)	227, 447, 717, 750, 816
DraI	TTTAAA	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	763
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	880
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	5 cut(s)	121, 383, 614, 667, 680
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 803, 835
FatI	CATG	5 cut(s)	117, 379, 610, 663, 676
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	241, 323, 479
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	3 cut(s)	241, 323, 479
GluI	GCNGC	3 cut(s)	241, 323, 479
GsaI	CCCAGC	2 cut(s)	108, 205
HaeIII	GGCC	3 cut(s)	258, 534, 880
HapII	CCGG	1 cut(s)	848
Hin1II	CATG	5 cut(s)	121, 383, 614, 667, 680
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	4 cut(s)	285, 635, 647, 872
HpaI	GTTAAC	1 cut(s)	742
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	4 cut(s)	13, 194, 220, 826
Hpy166II	GTNNAC	2 cut(s)	682, 742
Hpy188I	TCNGA	6 cut(s)	337, 464, 646, 657, 767, 805
Hpy188III	TCNNGA	4 cut(s)	231, 380, 820, 862
Hpy8I	GTNNAC	2 cut(s)	682, 742
HpyAV	CCTTC	6 cut(s)	44, 74, 110, 160, 179, 459
HpyCH4III	ACNGT	2 cut(s)	53, 439
HpyCH4IV	ACGT	4 cut(s)	70, 113, 313, 520
HpyCH4V	TGCA	6 cut(s)	293, 524, 610, 663, 676, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	4 cut(s)	70, 113, 313, 520
Hsp92II	CATG	5 cut(s)	121, 383, 614, 667, 680
Ksp22I	TGATCA	1 cut(s)	717
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	5 cut(s)	227, 447, 717, 750, 816
LmnI	GCTCC	2 cut(s)	160, 248
LpnPI	CCDG	9 cut(s)	118, 154, 187, 258, 612, 636, 861, 867, 894
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	4 cut(s)	70, 113, 313, 520
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	5 cut(s)	229, 449, 719, 752, 818
MboI	GATC	5 cut(s)	227, 447, 717, 750, 816
MboII	GAAGA	6 cut(s)	83, 415, 509, 602, 637, 745
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	4 cut(s)	39, 145, 343, 628
MlyI	GAGTC	2 cut(s)	294, 656
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	389, 569, 741
MspA1I	CMGCKG	1 cut(s)	723
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	5 cut(s)	227, 447, 717, 750, 816
NlaIII	CATG	5 cut(s)	121, 383, 614, 667, 680
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	680
PagI	TCATGA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	635, 872
PflMI	CCANNNNNTGG	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	242, 324, 480
PleI	GAGTC	2 cut(s)	293, 655
PpsI	GAGTC	2 cut(s)	293, 655
Ppu21I	YACGTR	3 cut(s)	71, 314, 521
Psp124BI	GAGCTC	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	880
PspFI	CCCAGC	2 cut(s)	104, 201
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	256
PsrI	GAACNNNNNNTAC	2 cut(s)	501, 533
PstNI	CAGNNNCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	11, 857
RsaNI	GTAC	2 cut(s)	10, 856
SacI	GAGCTC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	389, 569, 741
SatI	GCNGC	3 cut(s)	241, 323, 479
Sau3AI	GATC	5 cut(s)	227, 447, 717, 750, 816
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	2 cut(s)	294, 656
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	1 cut(s)	431
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	4 cut(s)	39, 145, 343, 628
SsiI	CCGC	5 cut(s)	240, 243, 322, 355, 723
SspI	AATATT	1 cut(s)	418
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	53, 439
TaiI	ACGT	4 cut(s)	73, 116, 316, 523
TaqI	TCGA	3 cut(s)	230, 288, 861
TasI	AATT	4 cut(s)	39, 145, 343, 628
TatI	WGTACW	2 cut(s)	9, 855
TauI	GCSGC	2 cut(s)	243, 325
TfiI	GAWTC	2 cut(s)	635, 872
Tru1I	TTAA	3 cut(s)	389, 569, 741
Tru9I	TTAA	3 cut(s)	389, 569, 741
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	106, 368, 573, 803
TspGWI	ACGGA	1 cut(s)	748
Van91I	CCANNNNNTGG	1 cut(s)	707
XapI	RAATTY	3 cut(s)	39, 343, 628
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.