Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

14037284 .. 14039904

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGACAACAACAATCGCAACGTTAGCAGCAGCAGTACCTCCAGAAGTGGTGGAGGAGGAAGAGATTGGGAGGTGAAAAATCATAGAGAAACATCGAAAGGGCGCGGAGGCGGCGGAGGTGGTGGCTCCGGCAAAGATAAAATTGACGCACTTGGTAGATTATTGACGCGTATATTGCGCCATATGGCGGGTGAGTTGAGTTTGAATATGCGAAGCGATGGATATGTGAAGGTTAAAGATCTATTAAAGCTAAACATAAAGACATTTGCTAATATTCCGTTGAGATCACATACTATTGATGAGATTAAGGAGGCTGTCAGAAAGGATAATAAGCAGCGCTTTGGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGCCACACAAGAACGATGGTTGAATCTGAAAGATTGTTGACACCAATCCTGTCATCTGAAGAAGTTCCAGTTTGCGTGCATGGGACCTACAGGAAGAATTTGGAATCCATATTAGGCTCCGGTCTAAAGACCATGAAAAGATTGCATGTTCACTTCTCACGTGGCTTGCCAACAGATGGGCAAGTGATTAGCGGTATGAGGTGCAATGCTAATGTTTTGATCTATCTCGATGTTAAAAAAGCTTTAGAAGAGGGAATGAAGTTTTATATTTCAGAGAACAAGGTGATCTTGACTGAAGGTTTTGATGGTGTTATTCCCGTCAAGTACTTTGAGAAAATAGAATCATGGCCCGATAGAAAGCCGATACCTTTCTCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

256

Amino Acids

28.42

Weight (kDa)

9.59

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccII	CGCG	2 cut(s)	105, 169
AciI	CCGC	5 cut(s)	105, 111, 114, 188, 579
AclI	AACGTT	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	2 cut(s)	465, 702
AcvI	CACGTG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	37, 713
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	187, 563
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	205, 410
AluBI	AGCT	2 cut(s)	250, 629
AluI	AGCT	2 cut(s)	250, 629
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	3 cut(s)	343, 388, 734
ApeKI	GCWGC	3 cut(s)	27, 30, 334
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	105, 180, 339
AspS9I	GGNCC	2 cut(s)	471, 735
AsuHPI	GGTGA	3 cut(s)	85, 203, 682
AvaII	GGWCC	1 cut(s)	471
BbrPI	CACGTG	1 cut(s)	548
BbvI	GCAGC	3 cut(s)	39, 42, 346
BccI	CCATC	4 cut(s)	212, 397, 557, 686
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	28, 31, 112, 335
BlsI	GCNGC	4 cut(s)	29, 32, 113, 336
BmcAI	AGTACT	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	471, 735
BmiI	GGNNCC	3 cut(s)	127, 472, 505
BpmI	CTGGAG	1 cut(s)	25
BsaAI	YACGTR	2 cut(s)	377, 548
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 563
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	187, 563
BseMI	GCAATG	1 cut(s)	598
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	39, 42, 346
Bsh1236I	CGCG	2 cut(s)	105, 169
BshFI	GGCC	3 cut(s)	345, 390, 736
BsiSI	CCGG	2 cut(s)	129, 507
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	187, 563
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	345, 390, 736
Bsp143I	GATC	4 cut(s)	238, 284, 606, 672
BspACI	CCGC	5 cut(s)	105, 111, 114, 188, 579
BspANI	GGCC	3 cut(s)	345, 390, 736
BspFNI	CGCG	2 cut(s)	105, 169
BspLI	GGNNCC	3 cut(s)	127, 472, 505
BsrDI	GCAATG	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	238, 284, 606, 672
BssT1I	CCWWGG	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	55, 630
BstBAI	YACGTR	2 cut(s)	377, 548
BstC8I	GCNNGC	2 cut(s)	464, 554
BstFNI	CGCG	2 cut(s)	105, 169
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	3 cut(s)	105, 180, 339
BstKTI	GATC	4 cut(s)	241, 287, 609, 675
BstMBI	GATC	4 cut(s)	238, 284, 606, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 111, 175
BstNSI	RCATGY	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	2 cut(s)	105, 169
BstV1I	GCAGC	3 cut(s)	39, 42, 346
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	345, 390, 736
BtgZI	GCGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	464, 554
CfoI	GCGC	3 cut(s)	105, 180, 339
Cfr13I	GGNCC	2 cut(s)	471, 735
CseI	GACGC	2 cut(s)	155, 175
Csp6I	GTAC	2 cut(s)	36, 712
CviAII	CATG	4 cut(s)	467, 520, 533, 732
CviQI	GTAC	2 cut(s)	36, 712
DpnI	GATC	4 cut(s)	240, 286, 608, 674
DpnII	GATC	4 cut(s)	238, 284, 606, 672
Eam1104I	CTCTTC	2 cut(s)	55, 630
EarI	CTCTTC	2 cut(s)	55, 630
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	465, 702
Eco72I	CACGTG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	4 cut(s)	470, 523, 536, 735
FalI	AAGNNNNNCTT	4 cut(s)	323, 355, 659, 691
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	466, 519, 532, 731
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	28, 31, 112, 335
Fsp4HI	GCNGC	4 cut(s)	28, 31, 112, 335
GlaI	GCGC	3 cut(s)	104, 179, 338
GluI	GCNGC	4 cut(s)	28, 31, 112, 335
GsuI	CTGGAG	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	345, 390, 736
HapII	CCGG	2 cut(s)	129, 507
HgaI	GACGC	2 cut(s)	155, 175
HhaI	GCGC	3 cut(s)	105, 180, 339
Hin1II	CATG	4 cut(s)	470, 523, 536, 735
Hin6I	GCGC	3 cut(s)	103, 178, 337
HinP1I	GCGC	3 cut(s)	103, 178, 337
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	3 cut(s)	410, 491, 728
HpaII	CCGG	2 cut(s)	129, 507
HphI	GGTGA	3 cut(s)	85, 203, 682
Hpy166II	GTNNAC	2 cut(s)	426, 538
Hpy188I	TCNGA	4 cut(s)	320, 415, 445, 661
Hpy188III	TCNNGA	3 cut(s)	42, 614, 676
Hpy8I	GTNNAC	2 cut(s)	426, 538
HpyAV	CCTTC	2 cut(s)	223, 677
HpyCH4IV	ACGT	3 cut(s)	21, 376, 547
HpyCH4V	TGCA	4 cut(s)	380, 466, 532, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 111, 175
HpySE526I	ACGT	3 cut(s)	21, 376, 547
Hsp92II	CATG	4 cut(s)	470, 523, 536, 735
HspAI	GCGC	3 cut(s)	103, 178, 337
Kzo9I	GATC	4 cut(s)	238, 284, 606, 672
LmnI	GCTCC	2 cut(s)	131, 509
LpnPI	CCDG	6 cut(s)	55, 142, 449, 463, 468, 520
Lsp1109I	GCAGC	3 cut(s)	39, 42, 346
MaeII	ACGT	3 cut(s)	21, 376, 547
MalI	GATC	4 cut(s)	240, 286, 608, 674
MboI	GATC	4 cut(s)	238, 284, 606, 672
MboII	GAAGA	5 cut(s)	72, 365, 458, 493, 647
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	2 cut(s)	141, 484
MluI	ACGCGT	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	4 cut(s)	234, 245, 306, 621
MspI	CCGG	2 cut(s)	129, 507
MvnI	CGCG	2 cut(s)	105, 169
MwoI	GCNNNNNNNGC	3 cut(s)	24, 111, 175
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	4 cut(s)	238, 284, 606, 672
NlaIII	CATG	4 cut(s)	470, 523, 536, 735
NlaIV	GGNNCC	3 cut(s)	127, 472, 505
NspI	RCATGY	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	410, 491, 728
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	29, 32, 113, 336
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
Ppu21I	YACGTR	2 cut(s)	377, 548
PpuMI	RGGWCCY	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	471
PspCI	CACGTG	1 cut(s)	548
PspN4I	GGNNCC	3 cut(s)	127, 472, 505
PspPI	GGNCC	2 cut(s)	471, 735
PspPPI	RGGWCCY	1 cut(s)	471
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	37, 713
RsaNI	GTAC	2 cut(s)	36, 712
SaqAI	TTAA	4 cut(s)	234, 245, 306, 621
SatI	GCNGC	4 cut(s)	28, 31, 112, 335
Sau3AI	GATC	4 cut(s)	238, 284, 606, 672
Sau96I	GGNCC	2 cut(s)	471, 735
ScaI	AGTACT	1 cut(s)	713
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	1 cut(s)	471
Sse9I	AATT	2 cut(s)	141, 484
SsiI	CCGC	5 cut(s)	105, 111, 114, 188, 579
SspI	AATATT	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	385
TaiI	ACGT	3 cut(s)	24, 379, 550
TaqI	TCGA	2 cut(s)	95, 615
TasI	AATT	2 cut(s)	141, 484
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	410, 491, 728
Tru1I	TTAA	4 cut(s)	234, 245, 306, 621
Tru9I	TTAA	4 cut(s)	234, 245, 306, 621
TseI	GCWGC	3 cut(s)	27, 30, 334
TspDTI	ATGAA	2 cut(s)	536, 659
TspGWI	ACGGA	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.