Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

17368100 .. 17368632

Gene Structure 533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGGTCTTGGAAAAAACCATGGGAATATAGGAATATTCATCTGGAAATGTGTTACATTGTAGATGCATATATAATGTGTATCGGAAGGGTAATGCACCTGACTGGCATAGGTTTTTTTTATATATTTTACACTATTCTTTGTATTTGTAGGACACGTATATTGCGCCATATGGCTTCTGATTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGGCATTTGCTAATATTCCCTTAAGCTCACATATTGTTGATGAGATTAAGGAGGCTGTTAGAAAGGATAATAAGCAGCGTTTTAGCCTCTTGGAAGAAAATGAGGAACTTTTGATGCGTGCAAACCAAGGACGCTCAACAACCGCAACTATCCTCGTTTATCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

138

Amino Acids

16.29

Weight (kDa)

7.71

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	53 - 129	4.5e-17	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	199, 390
AcsI	RAATTY	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	187, 247
AluBI	AGCT	2 cut(s)	238, 273
AluI	AGCT	2 cut(s)	238, 273
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	268
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
BmsI	GCATC	2 cut(s)	55, 351
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	20, 373
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	20, 373
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	2 cut(s)	199, 390
BspHI	TCATGA	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	20, 373
BssMI	GATC	1 cut(s)	226
BssT1I	CCWWGG	2 cut(s)	20, 373
BstAFI	CTTAAG	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	387
CviAII	CATG	2 cut(s)	21, 224
CviJI	RGCY	5 cut(s)	176, 238, 273, 302, 333
CviKI_1	RGCY	5 cut(s)	176, 238, 273, 302, 333
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	20, 373
EcoT14I	CCWWGG	2 cut(s)	20, 373
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	20, 373
FaeI	CATG	2 cut(s)	24, 227
FatI	CATG	2 cut(s)	20, 223
FauNDI	CATATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	24, 227
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	86, 181
Hpy188III	TCNNGA	2 cut(s)	44, 224
HpyAV	CCTTC	3 cut(s)	81, 211, 241
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	68, 97, 368, 413
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	24, 227
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	29, 90, 113
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	55, 351
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	353
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	4 cut(s)	292, 343, 344, 410
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	2 cut(s)	269, 294
MspCI	CTTAAG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	24, 227
NsiI	ATGCAT	1 cut(s)	70
PagI	TCATGA	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	324
Ppu21I	YACGTR	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	269, 294
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	226
SetI	ASST	6 cut(s)	102, 115, 160, 222, 240, 275
SfaNI	GCATC	2 cut(s)	55, 351
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	199, 390
SspI	AATATT	2 cut(s)	37, 262
StyI	CCWWGG	2 cut(s)	20, 373
TaiI	ACGT	1 cut(s)	160
TasI	AATT	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	269, 294
Tru9I	TTAA	2 cut(s)	269, 294
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	29, 212
Vha464I	CTTAAG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.