Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

7955687 .. 7956920

Gene Structure 1234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATCTTTGTGGATAGAATCGATGCCCTTGGACGAATCTTGACGAGAATATTGCGACATATGGCTACTGAGCTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTCAACCTGAATTTGAAAACTTGTGCAAATATTCAGTTAAATTCACACACGATTGATGAAATTAGAGAGGCTGTGACAAGGGACAATAAAAAACGGTTTAGCCTCATCGATGAGGATGGAGAGCTCTTGATTCGCGCTAATCAAGGCCACTCAATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATATTGTCACCAGAAGAAGCTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTAGAATCCATCTTAGCATCGGGCTTAAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCTACAGATGGTGAAGTGATTAGTGGCGTGAGAAGAAATGTAAATGTTATCATCTTCCTCCACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATTTTGACTCAAGGCATTGTTGGTGTCTTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGGCAATCCATACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

212

Amino Acids

24.06

Weight (kDa)

7.78

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	8 - 188	9e-58	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	255
AcsI	RAATTY	3 cut(s)	130, 160, 361
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	82, 113, 136, 512
AluBI	AGCT	4 cut(s)	73, 244, 329, 506
AluI	AGCT	4 cut(s)	73, 244, 329, 506
Alw21I	GWGCWC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	265, 611
ApoI	RAATTY	3 cut(s)	130, 160, 361
AspLEI	GCGC	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	104, 309, 455
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	5 cut(s)	89, 230, 380, 434, 509
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BfmI	CTRYAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	619
BmsI	GCATC	2 cut(s)	13, 389
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	543
Bsa29I	ATCGAT	2 cut(s)	21, 228
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	332
BseCI	ATCGAT	2 cut(s)	21, 228
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	60, 65
BseNI	ACTGG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	267, 613
BshVI	ATCGAT	2 cut(s)	21, 228
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	2 cut(s)	267, 613
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	3, 600, 616
BspANI	GGCC	2 cut(s)	267, 613
BspCNI	CTCAG	2 cut(s)	61, 66
BspDI	ATCGAT	2 cut(s)	21, 228
BspFNI	CGCG	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	3, 600, 616
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	216, 283
BstAUI	TGTACA	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	69, 74, 376
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	3 cut(s)	6, 603, 619
BstMBI	GATC	3 cut(s)	3, 600, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	255
Bsu15I	ATCGAT	2 cut(s)	21, 228
BsuRI	GGCC	2 cut(s)	267, 613
BsuTUI	ATCGAT	2 cut(s)	21, 228
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	257
ClaI	ATCGAT	2 cut(s)	21, 228
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	3 cut(s)	85, 344, 410
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	3 cut(s)	69, 74, 376
DpnI	GATC	3 cut(s)	5, 602, 618
DpnII	GATC	3 cut(s)	3, 600, 616
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	88, 347, 413
FaiI	YATR	8 cut(s)	60, 62, 86, 345, 354, 398, 411, 629
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	84, 343, 409
FauNDI	CATATG	1 cut(s)	60
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	246
GlaI	GCGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	267, 613
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	88, 347, 413
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	7 cut(s)	18, 36, 250, 287, 368, 556, 605
HphI	GGTGA	3 cut(s)	104, 309, 455
Hpy166II	GTNNAC	2 cut(s)	341, 415
Hpy188I	TCNGA	3 cut(s)	292, 538, 638
Hpy188III	TCNNGA	6 cut(s)	40, 247, 277, 499, 509, 595
Hpy8I	GTNNAC	2 cut(s)	341, 415
Hpy99I	CGWCG	1 cut(s)	283
HpyCH4III	ACNGT	2 cut(s)	216, 283
HpyCH4V	TGCA	2 cut(s)	146, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	3 cut(s)	69, 74, 376
Hsp92II	CATG	3 cut(s)	88, 347, 413
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	3, 600, 616
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	140, 333, 345, 594, 608, 627
LweI	GCATC	2 cut(s)	13, 389
MaeIII	GTNAC	3 cut(s)	193, 297, 315
MalI	GATC	3 cut(s)	5, 602, 618
MboI	GATC	3 cut(s)	3, 600, 616
MboII	GAAGA	7 cut(s)	125, 335, 370, 477, 478, 524, 610
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	130, 160, 180, 361
MlyI	GAGTC	3 cut(s)	296, 550, 614
MnlI	CCTC	5 cut(s)	83, 181, 226, 233, 500
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	4 cut(s)	105, 158, 303, 389
Mva1269I	GAATGC	1 cut(s)	411
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	619
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	3 cut(s)	3, 600, 616
NlaIII	CATG	3 cut(s)	88, 347, 413
NmuCI	GTSAC	2 cut(s)	193, 315
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	413
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	18, 36, 250, 368
PleI	GAGTC	3 cut(s)	295, 550, 613
PpsI	GAGTC	3 cut(s)	295, 550, 613
Psp124BI	GAGCTC	1 cut(s)	246
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	105, 158, 303, 389
Sau3AI	GATC	3 cut(s)	3, 600, 616
SchI	GAGTC	3 cut(s)	296, 550, 614
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	75, 94, 129, 246, 331, 436, 508, 634
SfaNI	GCATC	2 cut(s)	13, 389
SfcI	CTRYAG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	130, 160, 180, 361
SspI	AATATT	3 cut(s)	51, 151, 312
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	216, 283
TaqI	TCGA	4 cut(s)	21, 228, 585, 603
TasI	AATT	4 cut(s)	130, 160, 180, 361
TatI	WGTACW	1 cut(s)	340
TfiI	GAWTC	4 cut(s)	18, 36, 250, 368
Tru1I	TTAA	4 cut(s)	105, 158, 303, 389
Tru9I	TTAA	4 cut(s)	105, 158, 303, 389
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	193, 315
Tsp45I	GTSAC	2 cut(s)	193, 315
TspDTI	ATGAA	2 cut(s)	192, 413
TspRI	CASTG	1 cut(s)	339
XapI	RAATTY	3 cut(s)	130, 160, 361
XceI	RCATGY	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.