Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

51285781 .. 51286576

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGGGAGAGAGATCAAGAGGTCACGACGGAGGAAGGGGCTGTCGTGGCGGTGGCGGCTGCTCTTGCAAAGATAGAGTTGATGCACTTGGACACGTATATTGCGCCACATGGCTTCGAGTTGAATTTGGACATGTGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGACATTTGCTAATATTCCCTTGAGCTCACATATTGTTGATGACATTAAGGAGGCTGTTAGAAAGGATAATAAGCAGCGTTTTAGCCTCTTGGAAGAAAATGAGGAACTTTTGATACGTGCAAACCAAGGCCACACAACAACGGAAACTATCCTTGTTTATCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

4.8

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	40 - 109	2.3e-14	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 56
AcsI	RAATTY	1 cut(s)	124
AflIII	ACRYGT	2 cut(s)	93, 132
AgsI	TTSAA	2 cut(s)	124, 184
AluBI	AGCT	2 cut(s)	175, 210
AluI	AGCT	2 cut(s)	175, 210
Alw21I	GWGCWC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	59, 259
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	46, 271
BccI	CCATC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	57, 60, 260
BlsI	GCNGC	3 cut(s)	58, 61, 261
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	226
BsaAI	YACGTR	2 cut(s)	96, 302
BsaJI	CCNNGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	46, 271
BshFI	GGCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	13, 163
BspACI	CCGC	2 cut(s)	50, 56
BspANI	GGCC	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	13, 163
BssT1I	CCWWGG	1 cut(s)	310
BstBAI	YACGTR	2 cut(s)	96, 302
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	16, 166
BstMBI	GATC	2 cut(s)	13, 163
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
BstNSI	RCATGY	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	46, 271
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	106
CviAII	CATG	3 cut(s)	110, 133, 161
CviJI	RGCY	8 cut(s)	41, 59, 114, 175, 210, 239, 270, 315
CviKI_1	RGCY	8 cut(s)	41, 59, 114, 175, 210, 239, 270, 315
DpnI	GATC	2 cut(s)	15, 165
DpnII	GATC	2 cut(s)	13, 163
Ecl136II	GAGCTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	3 cut(s)	113, 136, 164
FaiI	YATR	6 cut(s)	99, 111, 134, 162, 216, 352
FatI	CATG	3 cut(s)	109, 132, 160
Fnu4HI	GCNGC	3 cut(s)	57, 60, 260
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	57, 60, 260
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	57, 60, 260
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	113, 136, 164
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
Hpy188III	TCNNGA	3 cut(s)	17, 25, 161
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	29, 148
HpyCH4IV	ACGT	2 cut(s)	95, 301
HpyCH4V	TGCA	4 cut(s)	68, 85, 305, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
HpySE526I	ACGT	2 cut(s)	95, 301
Hsp92II	CATG	3 cut(s)	113, 136, 164
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	13, 163
Lsp1109I	GCAGC	2 cut(s)	46, 271
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	2 cut(s)	95, 301
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	15, 165
MboI	GATC	2 cut(s)	13, 163
MboII	GAAGA	2 cut(s)	196, 290
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	1 cut(s)	124
MnlI	CCTC	5 cut(s)	13, 25, 229, 280, 281
MseI	TTAA	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 65
NdeII	GATC	2 cut(s)	13, 163
NlaIII	CATG	3 cut(s)	113, 136, 164
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	136
PagI	TCATGA	1 cut(s)	160
PciI	ACATGT	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	58, 61, 261
Ppu21I	YACGTR	2 cut(s)	96, 302
PscI	ACATGT	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	282, 314
SacI	GAGCTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	57, 60, 260
Sau3AI	GATC	2 cut(s)	13, 163
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	6 cut(s)	24, 98, 159, 177, 212, 304
SfaNI	GCATC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	2 cut(s)	50, 56
SspI	AATATT	1 cut(s)	199
SstI	GAGCTC	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	2 cut(s)	98, 304
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	124
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	59, 259
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	2 cut(s)	44, 341
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.