Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Reverse (-)

10728136 .. 10731273

Gene Structure 3138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTGGGCGTCTGTCACCCACAGTCACCTTCGAATTCTGCGCTACTCTCGTGCTTTCCTGATTCTCATGGACAGCAGACCCAGCAGCAGCAATTCCTTCGCTGCTTTTGCTCGTAATAACACAAGGGGCGGTGGTGGTATAGGAGGAGGTTGGGTGGTGAAAGATGAGGGAGAGAGATCGAGGGGTCGCGGTGGAGGAGGACGGGGCCATGGTGGTGGTGGTGGTGGCGGCTCTGGCAAAGATAGAGTTGATGCACTCGGTAGATTACTGACACGTATATTGCGCCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTGAAGCTCAACTTGAAGACGTTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATTAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGGTTCAGCCTCTTGGAAGAAAATGGGGAACTTCTGATACGTGCAAACCAAGGCCACTCCACAATGATAGTTGAGACTGAAAGATTATTAAAGCCAATCCTTTCATTTGAAGAAGTTCCAGTGTGCGTGCATGGAACTTATAGGAAGAATTTGGATTCGATATTAGAGTCTGGTCTGAAGTGCATGACAAGATTGCATGTTCACTTTGCAAGTGGCTTGCCAACAGATGGAGAAGTGATCAGCGGTATGCGACGAGATGTTAACATTTTGATCTTTCTTGATATCAGAAAAGCTTTAGCTGAGGGAATGAAGTTCTACATTTCAGACAACAAGGTGATCTTGACTGAAGGATTTGATGGTGTTGTTCCAGTCAAGTATTTTGAGAAAATAGAATCGTGGCCGAGCAGAAAGCCTATAGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

289

Amino Acids

31.9

Weight (kDa)

9.66

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	84 - 264	2.3e-57	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccII	CGCG	1 cut(s)	189
AciI	CCGC	6 cut(s)	129, 189, 228, 316, 442, 684
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	3 cut(s)	33, 304, 589
AcuI	CTGAAG	2 cut(s)	638, 807
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	304, 352, 364, 551
AluBI	AGCT	5 cut(s)	355, 390, 734, 740, 860
AluI	AGCT	5 cut(s)	355, 390, 734, 740, 860
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	509
AoxI	GGCC	3 cut(s)	205, 493, 839
ApeKI	GCWGC	4 cut(s)	84, 87, 101, 439
ApoI	RAATTY	3 cut(s)	33, 304, 589
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	42, 285
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	4 cut(s)	7, 17, 169, 787
AsuII	TTCGAA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	392
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	88, 96, 99, 451
BccI	CCATC	3 cut(s)	317, 662, 791
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	5 cut(s)	85, 88, 102, 229, 440
BlsI	GCNGC	5 cut(s)	86, 89, 103, 230, 441
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu14I	TTCGAA	1 cut(s)	31
BsaAI	YACGTR	2 cut(s)	275, 482
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	208, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	560, 809
BseDI	CCNNGG	2 cut(s)	208, 490
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	288, 732
BseNI	ACTGG	2 cut(s)	560, 809
BseRI	GAGGAG	2 cut(s)	159, 210
BseXI	GCAGC	4 cut(s)	88, 96, 99, 451
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	207, 495, 841
BsiHKAI	GWGCWC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	207, 495, 841
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	5 cut(s)	176, 343, 678, 711, 777
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	6 cut(s)	129, 189, 228, 316, 442, 684
BspANI	GGCC	3 cut(s)	207, 495, 841
BspCNI	CTCAG	2 cut(s)	289, 733
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	560, 809
BssECI	CCNNGG	2 cut(s)	208, 490
BssMI	GATC	5 cut(s)	176, 343, 678, 711, 777
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	2 cut(s)	208, 490
Bst2BI	CACGAG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	23, 400
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	2 cut(s)	275, 482
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	569, 659
BstDEI	CTNAG	2 cut(s)	297, 741
BstDSI	CCRYGG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	42, 285
BstKTI	GATC	5 cut(s)	179, 346, 681, 714, 780
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	176, 343, 678, 711, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 107, 234
BstNSI	RCATGY	1 cut(s)	641
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	88, 96, 99, 451
BstV2I	GAAGAC	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	207, 495, 841
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	569, 659
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	2 cut(s)	42, 285
Cfr13I	GGNCC	1 cut(s)	205
CviAII	CATG	6 cut(s)	67, 209, 341, 572, 625, 638
DdeI	CTNAG	2 cut(s)	297, 741
DpnI	GATC	5 cut(s)	178, 345, 680, 713, 779
DpnII	GATC	5 cut(s)	176, 343, 678, 711, 777
EaeI	YGGCCR	1 cut(s)	839
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	208, 490
Eco24I	GRGCYC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	638, 807
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	208, 490
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	2 cut(s)	208, 490
FaeI	CATG	6 cut(s)	70, 212, 344, 575, 628, 641
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 764, 796
FatI	CATG	6 cut(s)	66, 208, 340, 571, 624, 637
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	85, 88, 102, 229, 440
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	85, 88, 102, 229, 440
GlaI	GCGC	2 cut(s)	41, 284
GluI	GCNGC	5 cut(s)	85, 88, 102, 229, 440
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	207, 495, 841
HhaI	GCGC	2 cut(s)	42, 285
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	70, 212, 344, 575, 628, 641
Hin6I	GCGC	2 cut(s)	40, 283
HinP1I	GCGC	2 cut(s)	40, 283
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	4 cut(s)	61, 596, 608, 833
HpaI	GTTAAC	1 cut(s)	703
HphI	GGTGA	4 cut(s)	7, 17, 169, 787
Hpy166II	GTNNAC	2 cut(s)	643, 703
Hpy188I	TCNGA	6 cut(s)	298, 425, 477, 618, 728, 766
Hpy188III	TCNNGA	4 cut(s)	58, 341, 719, 781
Hpy8I	GTNNAC	2 cut(s)	643, 703
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	5 cut(s)	38, 106, 328, 420, 782
HpyCH4III	ACNGT	2 cut(s)	23, 400
HpyCH4IV	ACGT	3 cut(s)	274, 368, 481
HpyCH4V	TGCA	6 cut(s)	254, 485, 571, 624, 637, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 107, 234
HpyF3I	CTNAG	2 cut(s)	297, 741
HpySE526I	ACGT	3 cut(s)	274, 368, 481
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	6 cut(s)	70, 212, 344, 575, 628, 641
HspAI	GCGC	2 cut(s)	40, 283
Ksp22I	TGATCA	1 cut(s)	678
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	5 cut(s)	176, 343, 678, 711, 777
LpnPI	CCDG	6 cut(s)	71, 94, 219, 573, 597, 822
Lsp1109I	GCAGC	4 cut(s)	88, 96, 99, 451
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	3 cut(s)	274, 368, 481
MaeIII	GTNAC	2 cut(s)	13, 23
MalI	GATC	5 cut(s)	178, 345, 680, 713, 779
MboI	GATC	5 cut(s)	176, 343, 678, 711, 777
MboII	GAAGA	4 cut(s)	376, 470, 563, 598
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	4 cut(s)	33, 91, 304, 589
MlyI	GAGTC	1 cut(s)	617
MnlI	CCTC	9 cut(s)	137, 140, 160, 174, 188, 191, 409, 461, 736
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	3 cut(s)	411, 530, 702
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	442, 684
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	81, 107, 234
NcoI	CCATGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	5 cut(s)	176, 343, 678, 711, 777
NlaIII	CATG	6 cut(s)	70, 212, 344, 575, 628, 641
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	867
NmuCI	GTSAC	2 cut(s)	13, 23
NspI	RCATGY	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	31
PagI	TCATGA	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	61, 596, 833
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	5 cut(s)	86, 89, 103, 230, 441
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
Ppu21I	YACGTR	2 cut(s)	275, 482
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	205
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	411, 530, 702
SatI	GCNGC	5 cut(s)	85, 88, 102, 229, 440
Sau3AI	GATC	5 cut(s)	176, 343, 678, 711, 777
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	855
SfuI	TTCGAA	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	33, 91, 304, 589
SsiI	CCGC	6 cut(s)	129, 189, 228, 316, 442, 684
SspI	AATATT	1 cut(s)	379
SstI	GAGCTC	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	208, 490
TaaI	ACNGT	2 cut(s)	23, 400
TaiI	ACGT	3 cut(s)	277, 371, 484
TaqI	TCGA	3 cut(s)	31, 179, 599
TasI	AATT	4 cut(s)	33, 91, 304, 589
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	61, 596, 833
Tru1I	TTAA	3 cut(s)	411, 530, 702
Tru9I	TTAA	3 cut(s)	411, 530, 702
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	2 cut(s)	13, 23
TseI	GCWGC	4 cut(s)	84, 87, 101, 439
Tsp45I	GTSAC	2 cut(s)	13, 23
TspDTI	ATGAA	3 cut(s)	329, 534, 764
TspRI	CASTG	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	668
XapI	RAATTY	3 cut(s)	33, 304, 589
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.