Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

14382960 .. 14394111

Gene Structure 11152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCAGGAGGTGTATTCCTTGTTACCATTCATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTCTACCCGAATATCAATAGCAATGGAAGCATTTGTCTTGATATCCTCAAAGAAAAATGGAGTCCAACCCTTACTATCTCTAAGGACACGTATATTGCGCCATATGGCTTCTGAGTTGAATTTGGATATGCGGAGTGATGGATTTGTGAAGGTTCATGATCTTTTAGAGCTAAACTTGAAGACATTTGCTAATATTCCCTTGAGCTCACATATTGTTGATGAGATTAAGGAGTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

108

Amino Acids

12.27

Weight (kDa)

8.98

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	59 - 89	1.7e-06	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	54, 205, 265
AluBI	AGCT	2 cut(s)	256, 291
AluI	AGCT	2 cut(s)	256, 291
Alw21I	GWGCWC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	293
BbsI	GAAGAC	2 cut(s)	78, 272
Bbv12I	GWGCWC	1 cut(s)	293
BccI	CCATC	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	82
BpiI	GAAGAC	2 cut(s)	78, 272
BpuEI	CTTGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	114
BssMI	GATC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	176
BstDEI	CTNAG	4 cut(s)	62, 80, 167, 198
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	82
BstV2I	GAAGAC	2 cut(s)	78, 272
Bsu36I	CCTNAGG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	186
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	3 cut(s)	194, 256, 291
CviKI_1	RGCY	3 cut(s)	194, 256, 291
DdeI	CTNAG	4 cut(s)	62, 80, 167, 198
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	1 cut(s)	245
FaiI	YATR	7 cut(s)	179, 189, 191, 215, 243, 297, 325
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	293
GlaI	GCGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	40, 124, 242
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	4, 70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	62, 80, 167, 198
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	78, 277
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	47, 142
MseI	TTAA	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	245
PagI	TCATGA	1 cut(s)	241
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	8 cut(s)	12, 63, 68, 86, 178, 240, 258, 293
SgeI	CNNG	9 cut(s)	17, 31, 52, 105, 136, 186, 254, 274, 298
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	280
SstI	GAGCTC	1 cut(s)	293
TaiI	ACGT	1 cut(s)	178
TasI	AATT	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	19, 230
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.